RNA id: TU111308


Basic Information

Item Value
RNA id TU111308
length 305
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G82596
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23208495 ~ 23208799 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCTGTATCTGCTGCTGTGACATGAAAGAAAACTCTTAAAATCTTGTTGTGCAAAGACTGGCCTACTTTACCCACAATTCTGTGCAGAGACGAGCGAATTCACTATTTTCTCTTGAGTTGAATATTAGCTACACACGCGATTAAATGCAAAGCTTACTACATTTGTTAGTTTGTGTTCCAGTTGATGTACTCAGCAGTAAAATAGCTACATACTGACGCATGAGTTTTTCTGCTTGTTCTGTTCATTTGCTAAGCTAGCTGTTTATGTTAGCCATGAATCAGACGGGTCGAGTACTGAAGCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111297 lncRNA upstream 3051 23204815 ~ 23205444 (+) True G82588
TU111288 lncRNA upstream 14205 23127953 ~ 23194290 (+) True G82579
TU111292 lncRNA upstream 43432 23164013 ~ 23165063 (+) True G82583
TU111213 lncRNA upstream 656706 22549865 ~ 22551789 (+) True G82515
XR_002650283.1 lncRNA upstream 799460 22393995 ~ 22409035 (+) True LOC111193141
TU111319 lncRNA downstream 16966 23225765 ~ 23226910 (+) True G82606
TU111497 lncRNA downstream 264405 23473204 ~ 23473455 (+) True G82748
TU111516 lncRNA downstream 289920 23498719 ~ 23499013 (+) True G82754
TU111515 lncRNA downstream 290237 23499036 ~ 23552919 (+) True G82753
TU111526 lncRNA downstream 372349 23581148 ~ 23581751 (+) True G82763
XM_007253775.3 mRNA upstream 53910 22857844 ~ 23154585 (+) True npas3
XM_007253777.3 mRNA upstream 364117 22711082 ~ 22844378 (+) True akap6
XM_007253783.3 mRNA upstream 516335 22686731 ~ 22692160 (+) True LOC103036290
XM_022672943.1 mRNA upstream 545368 22638733 ~ 22663127 (+) True tonsl
XM_022672482.1 mRNA upstream 570702 22627304 ~ 22637793 (+) True edrf1
XM_007240478.3 mRNA downstream 33372 23242171 ~ 23248849 (+) True srp54
XM_015603404.2 mRNA downstream 33372 23242171 ~ 23248849 (+) False srp54
XM_007240480.3 mRNA downstream 41861 23250660 ~ 23267862 (+) True sec23a
XM_007251888.3 mRNA downstream 100246 23309045 ~ 23312366 (+) True clec14a
XM_007251890.3 mRNA downstream 156632 23365431 ~ 23368635 (+) True foxa1
TU111179 other upstream 850360 22357644 ~ 22358135 (+) True G82488
TU110179 other upstream 3534857 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 3542448 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 4277741 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 4687548 18511622 ~ 18520947 (+) False LOC103033848
TU111323 other downstream 21631 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 666640 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 666640 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 700883 23909682 ~ 23920698 (+) True G82811
TU111651 other downstream 930590 24139389 ~ 24142232 (+) True G82853

Expression Profile