RNA id: TU111323


Basic Information

Item Value
RNA id TU111323
length 491
RNA type TUCP
GC content 0.46
exon number 4
gene id G82609
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23230430 ~ 23231318 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAGCCTGGAAAATGGCAGACAGGAAAAAGAAGAGCAGCTCGCACAACGGCCCCTCCGGATCACAGCCCATCAGAGCCTCTTCCAGAACCTCTAGTGTGATCCCATCAGGAAACTCATCTTTTAGGTCAAAGAGCTCTCCAAATGCTTTCAGAAATTCTAGCACCATCAGGGCATCTCCGAACAGCTCTGGAGGCAGACGGGTCTTCACTGGCACCGGCTTTGGTagctcCTTTAGATCATCACACTCCATGTCCTCTCGAGGTTTATTCCACAGCTTTAGTCGTTCAGCatatttcttcttctcctccttcagcTTTTCCCGTTCcctctctttctccatcttcaTGCGTTCcttctcttcccttctcttctGTTTTTCCTCCTCAACCATTTTCTTGagttcttcttttcttctgtctctgtcttccttttctttctttttggctTCCAACAAATCATCTCTTTCTCGCTTTAATTTAGATTTCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111319 lncRNA upstream 3520 23225765 ~ 23226910 (+) True G82606
TU111308 lncRNA upstream 21631 23208495 ~ 23208799 (+) True G82596
TU111297 lncRNA upstream 24986 23204815 ~ 23205444 (+) True G82588
TU111288 lncRNA upstream 36140 23127953 ~ 23194290 (+) True G82579
TU111292 lncRNA upstream 65367 23164013 ~ 23165063 (+) True G82583
TU111497 lncRNA downstream 241886 23473204 ~ 23473455 (+) True G82748
TU111516 lncRNA downstream 267401 23498719 ~ 23499013 (+) True G82754
TU111515 lncRNA downstream 267718 23499036 ~ 23552919 (+) True G82753
TU111526 lncRNA downstream 349830 23581148 ~ 23581751 (+) True G82763
TU111529 lncRNA downstream 359182 23590500 ~ 23590893 (+) True G82766
XM_007253775.3 mRNA upstream 75845 22857844 ~ 23154585 (+) True npas3
XM_007253777.3 mRNA upstream 386052 22711082 ~ 22844378 (+) True akap6
XM_007253783.3 mRNA upstream 538270 22686731 ~ 22692160 (+) True LOC103036290
XM_022672943.1 mRNA upstream 567303 22638733 ~ 22663127 (+) True tonsl
XM_022672482.1 mRNA upstream 592637 22627304 ~ 22637793 (+) True edrf1
XM_007240478.3 mRNA downstream 10853 23242171 ~ 23248849 (+) True srp54
XM_015603404.2 mRNA downstream 10853 23242171 ~ 23248849 (+) False srp54
XM_007240480.3 mRNA downstream 19342 23250660 ~ 23267862 (+) True sec23a
XM_007251888.3 mRNA downstream 77727 23309045 ~ 23312366 (+) True clec14a
XM_007251890.3 mRNA downstream 134113 23365431 ~ 23368635 (+) True foxa1
TU111179 other upstream 872295 22357644 ~ 22358135 (+) True G82488
TU110179 other upstream 3556792 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 3564383 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 4299676 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 4709483 18511622 ~ 18520947 (+) False LOC103033848
TU111569 other downstream 644121 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 644121 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 678364 23909682 ~ 23920698 (+) True G82811
TU111651 other downstream 908071 24139389 ~ 24142232 (+) True G82853
trnal-uaa_1 other downstream 1075293 24306611 ~ 24306693 (+) True trnal-uaa_1

Expression Profile