RNA id: TU111497


Basic Information

Item Value
RNA id TU111497
length 252
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G82748
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23473204 ~ 23473455 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATAGCTTAAGCATCACCATCACAATACATACATGTCTAATACTCACACCACAGGACATGAAACGTTACACAAGGCAAATTAAATGTCATTCTACATCTTGCCTGATGCAAATCAATAACACCAATTGTTCTCCTTTTTTCATGATATATGTACAAGATTCTAGTTGTCCATTATCATTTTATTCCAGTCTGCATTTCAAAGAGTGCATTAATAATTTCATAACAGGTTGGATCACTGACTTTGGAAGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111319 lncRNA upstream 246294 23225765 ~ 23226910 (+) True G82606
TU111308 lncRNA upstream 264405 23208495 ~ 23208799 (+) True G82596
TU111297 lncRNA upstream 267760 23204815 ~ 23205444 (+) True G82588
TU111288 lncRNA upstream 278914 23127953 ~ 23194290 (+) True G82579
TU111292 lncRNA upstream 308141 23164013 ~ 23165063 (+) True G82583
TU111516 lncRNA downstream 25264 23498719 ~ 23499013 (+) True G82754
TU111515 lncRNA downstream 25581 23499036 ~ 23552919 (+) True G82753
TU111526 lncRNA downstream 107693 23581148 ~ 23581751 (+) True G82763
TU111529 lncRNA downstream 117045 23590500 ~ 23590893 (+) True G82766
TU111531 lncRNA downstream 122757 23596212 ~ 23596474 (+) True G82768
XM_007251896.3 mRNA upstream 118 23454001 ~ 23473086 (+) True tyro3
XM_007251890.3 mRNA upstream 104569 23365431 ~ 23368635 (+) True foxa1
XM_007251888.3 mRNA upstream 160838 23309045 ~ 23312366 (+) True clec14a
XM_007240480.3 mRNA upstream 205342 23250660 ~ 23267862 (+) True sec23a
XM_007240478.3 mRNA upstream 224355 23242171 ~ 23248849 (+) True srp54
XM_007251893.3 mRNA downstream 1804 23475259 ~ 23498557 (+) True LOC103028567
XM_022672964.1 mRNA downstream 32201 23505656 ~ 23549535 (+) True LOC103030470
XM_022672965.1 mRNA downstream 33323 23506778 ~ 23549535 (+) False LOC103030470
XM_007251901.3 mRNA downstream 33323 23506778 ~ 23549342 (+) False LOC103030470
XM_022672969.1 mRNA downstream 85597 23559052 ~ 23563050 (+) False LOC103031726
TU111323 other upstream 241886 23230430 ~ 23231318 (+) True G82609
TU111179 other upstream 1115069 22357644 ~ 22358135 (+) True G82488
TU110179 other upstream 3799566 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 3807157 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 4542450 18930238 ~ 18930754 (+) True G81704
TU111569 other downstream 401984 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 401984 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 436227 23909682 ~ 23920698 (+) True G82811
TU111651 other downstream 665934 24139389 ~ 24142232 (+) True G82853
trnal-uaa_1 other downstream 833156 24306611 ~ 24306693 (+) True trnal-uaa_1

Expression Profile