RNA id: TU111515


Basic Information

Item Value
RNA id TU111515
length 3375
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G82753
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23499036 ~ 23552919 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atatatatatatatatatatatattttactatatatagtcGAGACATTCTTCTTTCCTTTGGACTTGTGCTCAGTTGTGGGGATGTGAAGGAGATCATGTGTTCACATGCTGCAGCATGTATGTTTCCTTACACACTGATGATGATTTTATGACTATGGCCACGCTCAGACCGCCTGGACCACCCAGAATTCGGCATGGCCGGCCTGCACTACAGACTTGAACCTCACCACCCTACCTCCCTTTTTAACGTGCTTCTGCAGCACCATGCACTCTCCTCTCCGCCACTTCACCTCATTGCCAAATACTGTGCCCTTTTACTAAACAGTAGatctggttgtttttttttatacaggagCAAAGACAGACTGAAGGAACACTTGCATGGCTTGGAGACAGGTGGAGAGACTGGAGCTTTGCTTGCTtgttacagcttttaaatgatgaaTGGAATAATTCCCTGACTCAGCAAAATTGGGCCAACGCctgaaaggctttttttttttttttgctgaacttcCTTATTGAAAAACTGACTAGAATAATGCTCAGTCAGAGTAACTAGGTTTACTTGTCTTAAAAGCCAGATTGTGTTTTTCCCTCATTTATAACTTGCATTATGAGgttgtttttatattgtatatgttgTGTTTGCTGCAGATGTGTGACTGTATTTATTCTCAAGTGATGGGTCAATACCTGGGGCTTCTAGTCCCTGATATACATAATCATATCAGATGTATGACTAGCCCCTTTTTTCTAGATTCACTGTTTATTTGATTATCTCTGCTTGACCATAATGGGGcactttgtagttttataattacagactgtagtcctctatctgtttctcagtgtacgggaccaccacagagcaggtattatttgtggGGTGAGTCATGCTTagtactgcagtgacactgacggtggtgtgttaatgtgtgttgtgctggttggTGACacctgaggtgtttaaaaactccagcatcaCTGCAGTGTCTGCTCAActtataccagcacaacacacacttaacaTATTACCACAATGTCAGTCAGTTAttgattggggaaaaaaaaaaaaaaaacaccacccaAATAGTATCAGCTCTATGGTGGTCCTAACCATTAAAGTACAGGGTGGGCAGAGGTACAAAACAAAGTGCTCCTGTAGGGACAGTAGAGCTGatgaaatgaacagtaaatgTAGAAACacagaggtggtcataatattctgatatgaatgtgtaattttgtacagtgagtgtgtatgtggtaTGTGTGTGCTCTGATACTGGATACCCTTAGTGTCAGTATGGTGCCCGATGAGTGTCACTTAGAAAGGCATCTGCTTTAGAGAGGGAAACAGATATACTGAGGATTTTCTAAAAACGACAGCATCCAAATCTCAAAGGAATTTTGAAGGACTGTTTTGTACATGCCTGagacttttttgtactttaaatTGACATGGCAAATGTCTGAAGAATGTGGGTGCCTTAATTTATAAACCAGCAATTTGTCATTAAGGGGGTTAATATCATTTATAACTCTAAGATGATGTTCTCAATACTGTTTGGATGCTGTCTTCCTCAATATGACTGATGCATACCAGACAGAAAATTTAGATTCAACTGCCATAGAAATATAACGTCCTGGTGACACAGGTAGGACTGTCACACCCTCTAGGCCATCACAAGGCAAATGTCTCATGTCTCAGAAGATCCCATTTACACCTGGTCCCTTATTGCAGAGTTAAAATTAGGATTATATCTGGAAAATGCCATGCAGTAAGTTACTGGAGCAAATTTTAAAACAGCAACCATCTTTAGCACAGCACAGAAGGGGGATACAGTGCTGAACTACCGGTTGCCACATAAGATGATTCGCATATTCAGTCCCACTACCCAGAGATACATTAGACAAGTGATCAAGTGTAAATTCTTGGCTAACATCTAATCTGGATTAGAATGcaccaaacaaaatgaaaatgggtTTGTGGGCCTGCTgccactgctgaaaaaaaaaaatccttacacAACAAAAAACGTCAAACTATTCTCAATTATTCACTTATTCAGCCATACATAAACAGTTTTTGCCagttaaatatttttggttgccaaataattAATCGGTGCATCCCAAATCAGGATACAAATATCATGAAGTAACCATTTGTACACAAAGACTCACAAAATCACCAATCTCCAAAATGACCACTGAGGTTCTGTCCAAGTTTCTCAGGTTTAGATTGAGCCTAGACTCTAGAGTATTTTCACACTTCACACTGATCAAATCTGCCTGACCAAATCCCTCATACTGAAACTGAGTTTACGAGACACTGCATCTAGGTTGAGATAGCTGGGTTTCTCTACCCACTGGCACAaacttcctctttttttcttaatgatAAAGCTAATAGCAATGTACAGAAAAGCACTTTCACTGTAGGAGAGTAGTCATTAAGGTGATAGCATTGGGATACTGTAGGAATACTGTTTCTTTTGGACCTATGTGTACTGTATACTGTTCAGACTTTCTCATATTGTTACAGAATATGGTGCTTGTGCTCAGTGCAGCGTACAGAGCACTACGGAACCTATTTCTTGTTGCCCAcatcaaaaaaagaaagcatTAATCTGATCCTACAATTCCACATCAATACAGACTCCAGTTCCTCTCTCTAGTTTAAGCTTGAGTTCAGTTTTACAAACATCTGCTCAATCTCACTCATACAGTAATGAGCAAACAGACTATTCAGGTATGAGGAGGATTTTGATTTTAGTATGCCAACACAATTCTTATTTCATCTACAgcataagttaaaaaaaaaaagtgctaattTTTATACACACGTATAAATATGCATGAGACCAATAATAGCAACTGAATAAGCAGAGGTATCAGATATGTTTTAAATCAATGGATTAAGCATATTAATCATTTAGCTAAACTGAGTGTACTGAACTGAAGATGTAGGATTGTAGCTAATGCCAGAGGTGGAGTTATTTTACTGCTAGCATGAATCTACTCTGTATGCATGCAGAGCGATGGACTTTAAGGCTGATCTGTTCTCTGAACTAGAATGCATGGTTGAATATTTGACTTGCCTCATAAACAGTCATTCAGCACTTTGCCATTCAGTGCTACCTCTGTGGCTTCCTGGCTCTGTTCTCATCTCCTGTATGGGCAACAAATAACATAGAATAGCATTTAAAATTGGACCAGATGGGTTTAAGACTGTTTCTCATTTGCTTGTTTGCCAAACTCATGGCTTGTTTGTGTTGCATCAATCaacaattacatattttttatcttcattgtcctctggaataaaaaaaatctcaagtatgtgaataaaactgtatttattatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111516 lncRNA upstream 23 23498719 ~ 23499013 (+) True G82754
TU111497 lncRNA upstream 25581 23473204 ~ 23473455 (+) True G82748
TU111319 lncRNA upstream 272126 23225765 ~ 23226910 (+) True G82606
TU111308 lncRNA upstream 290237 23208495 ~ 23208799 (+) True G82596
TU111297 lncRNA upstream 293592 23204815 ~ 23205444 (+) True G82588
TU111526 lncRNA downstream 28229 23581148 ~ 23581751 (+) True G82763
TU111529 lncRNA downstream 37581 23590500 ~ 23590893 (+) True G82766
TU111531 lncRNA downstream 43293 23596212 ~ 23596474 (+) True G82768
TU111552 lncRNA downstream 216606 23769525 ~ 23772117 (+) True G82785
TU111587 lncRNA downstream 351941 23904860 ~ 23905395 (+) True G82813
XM_007251893.3 mRNA upstream 479 23475259 ~ 23498557 (+) True LOC103028567
XM_007251896.3 mRNA upstream 25950 23454001 ~ 23473086 (+) True tyro3
XM_007251890.3 mRNA upstream 130401 23365431 ~ 23368635 (+) True foxa1
XM_007251888.3 mRNA upstream 186670 23309045 ~ 23312366 (+) True clec14a
XM_007240480.3 mRNA upstream 231174 23250660 ~ 23267862 (+) True sec23a
XM_022672969.1 mRNA downstream 6133 23559052 ~ 23563050 (+) False LOC103031726
XM_007251904.3 mRNA downstream 6133 23559052 ~ 23563044 (+) True LOC103031726
XM_007251903.3 mRNA downstream 11207 23564126 ~ 23570689 (+) True atg14
XM_007251917.3 mRNA downstream 322615 23875534 ~ 23877770 (+) False timm9
XM_022672974.1 mRNA downstream 322803 23875722 ~ 23877770 (+) False timm9
TU111323 other upstream 267718 23230430 ~ 23231318 (+) True G82609
TU111179 other upstream 1140901 22357644 ~ 22358135 (+) True G82488
TU110179 other upstream 3825398 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 3832989 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 4568282 18930238 ~ 18930754 (+) True G81704
TU111569 other downstream 322520 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 322520 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 356763 23909682 ~ 23920698 (+) True G82811
TU111651 other downstream 586470 24139389 ~ 24142232 (+) True G82853
trnal-uaa_1 other downstream 753692 24306611 ~ 24306693 (+) True trnal-uaa_1

Expression Profile