RNA id: TU111516


Basic Information

Item Value
RNA id TU111516
length 295
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G82754
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23498719 ~ 23499013 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATCAAGCCACAGCTATTACATTATATTCTAGTgttaattaatgctgtagtaAATATCAGTGCAGGTGTCTAAAATACACACTGGCCATTAGCTTTATCCCACTGTGTATTGAGACTGTAATAAGAGCATGAAAGGGCAGGCTGTCTCGTTGCGTGAGAGGTGTTTGCAGGTTTGCTTAGTGACCTGTTCATCTTAATACTAATCTTGTTCAGTGACTTTACACTAACAGTGTTCCACAGTTGAATACATCTGCTAATTGGAATACAGATATACAAGTAAACAGCATCATAGAGA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111497 lncRNA upstream 25264 23473204 ~ 23473455 (+) True G82748
TU111319 lncRNA upstream 271809 23225765 ~ 23226910 (+) True G82606
TU111308 lncRNA upstream 289920 23208495 ~ 23208799 (+) True G82596
TU111297 lncRNA upstream 293275 23204815 ~ 23205444 (+) True G82588
TU111288 lncRNA upstream 304429 23127953 ~ 23194290 (+) True G82579
TU111515 lncRNA downstream 23 23499036 ~ 23552919 (+) True G82753
TU111526 lncRNA downstream 82135 23581148 ~ 23581751 (+) True G82763
TU111529 lncRNA downstream 91487 23590500 ~ 23590893 (+) True G82766
TU111531 lncRNA downstream 97199 23596212 ~ 23596474 (+) True G82768
TU111552 lncRNA downstream 270512 23769525 ~ 23772117 (+) True G82785
XM_007251893.3 mRNA upstream 162 23475259 ~ 23498557 (+) True LOC103028567
XM_007251896.3 mRNA upstream 25633 23454001 ~ 23473086 (+) True tyro3
XM_007251890.3 mRNA upstream 130084 23365431 ~ 23368635 (+) True foxa1
XM_007251888.3 mRNA upstream 186353 23309045 ~ 23312366 (+) True clec14a
XM_007240480.3 mRNA upstream 230857 23250660 ~ 23267862 (+) True sec23a
XM_022672964.1 mRNA downstream 6643 23505656 ~ 23549535 (+) True LOC103030470
XM_022672965.1 mRNA downstream 7765 23506778 ~ 23549535 (+) False LOC103030470
XM_007251901.3 mRNA downstream 7765 23506778 ~ 23549342 (+) False LOC103030470
XM_022672969.1 mRNA downstream 60039 23559052 ~ 23563050 (+) False LOC103031726
XM_007251904.3 mRNA downstream 60039 23559052 ~ 23563044 (+) True LOC103031726
TU111323 other upstream 267401 23230430 ~ 23231318 (+) True G82609
TU111179 other upstream 1140584 22357644 ~ 22358135 (+) True G82488
TU110179 other upstream 3825081 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 3832672 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 4567965 18930238 ~ 18930754 (+) True G81704
TU111569 other downstream 376426 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 376426 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 410669 23909682 ~ 23920698 (+) True G82811
TU111651 other downstream 640376 24139389 ~ 24142232 (+) True G82853
trnal-uaa_1 other downstream 807598 24306611 ~ 24306693 (+) True trnal-uaa_1

Expression Profile