RNA id: TU111526


Basic Information

Item Value
RNA id TU111526
length 580
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G82763
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23581148 ~ 23581751 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGTACTACTGTCACTTCCACTGAAGCCATCTCTGTTTCAGCACCAGAGCACTGCTGCAGGTCACACAACACGTGAACACAGTAATATGTATACACTGTTCATTACAGCACAGCACATGGGTTAAACTGTCCGACACCTCCAGAGCTTCACCCAAGTTTCAGTGATTGGCCAGAACAGTTGGGGGCGGCTCTGTGCACAGGCATGCATGTGCCTGCAAGGAGAAATAAAGGAGGTCTGAGGAGCCAATGGCTATTCAATGTCCCCCACATGTCTATATAAGGCAACAATAATCAATACTTTTACAATCCGACTGACGAGAGGGACAGAACCCAGATTACGTGATGCTGGTGCAGGGGCTTGCACATCCAAGAATATGCACTTTGTAATAAGCAAACAAGCAGACAGCAAACAGTCACATTGAAAAACTGTGCATTCCTGAGAACATTGCATATCACACTTCCCCTACCTGAACTTTCCAAAAACAATGGAACTCATTCAAGAGGTGTGGCTACCTAGCTTACACAATGCCATTTTTAACACATCCTAGAGCTGCTCCAAAAACAACCACCACAACAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111515 lncRNA upstream 28229 23499036 ~ 23552919 (+) True G82753
TU111516 lncRNA upstream 82135 23498719 ~ 23499013 (+) True G82754
TU111497 lncRNA upstream 107693 23473204 ~ 23473455 (+) True G82748
TU111319 lncRNA upstream 354238 23225765 ~ 23226910 (+) True G82606
TU111308 lncRNA upstream 372349 23208495 ~ 23208799 (+) True G82596
TU111529 lncRNA downstream 8749 23590500 ~ 23590893 (+) True G82766
TU111531 lncRNA downstream 14461 23596212 ~ 23596474 (+) True G82768
TU111552 lncRNA downstream 187774 23769525 ~ 23772117 (+) True G82785
TU111587 lncRNA downstream 323109 23904860 ~ 23905395 (+) True G82813
TU111588 lncRNA downstream 326587 23908338 ~ 23908608 (+) True G82814
XM_007251903.3 mRNA upstream 10459 23564126 ~ 23570689 (+) True atg14
XM_022672969.1 mRNA upstream 18098 23559052 ~ 23563050 (+) False LOC103031726
XM_007251904.3 mRNA upstream 18104 23559052 ~ 23563044 (+) True LOC103031726
XM_022672964.1 mRNA upstream 31613 23505656 ~ 23549535 (+) True LOC103030470
XM_022672965.1 mRNA upstream 31613 23506778 ~ 23549535 (+) False LOC103030470
XM_007251917.3 mRNA downstream 293783 23875534 ~ 23877770 (+) False timm9
XM_022672974.1 mRNA downstream 293971 23875722 ~ 23877770 (+) False timm9
XM_007251931.3 mRNA downstream 358159 23939910 ~ 24009312 (+) False LOC103037620
XM_007251933.3 mRNA downstream 358160 23939911 ~ 24009312 (+) False LOC103037620
XM_007251937.3 mRNA downstream 358160 23939911 ~ 24009312 (+) False LOC103037620
TU111323 other upstream 349830 23230430 ~ 23231318 (+) True G82609
TU111179 other upstream 1223013 22357644 ~ 22358135 (+) True G82488
TU110179 other upstream 3907510 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 3915101 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 4650394 18930238 ~ 18930754 (+) True G81704
TU111569 other downstream 293688 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 293688 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 327931 23909682 ~ 23920698 (+) True G82811
TU111651 other downstream 557638 24139389 ~ 24142232 (+) True G82853
trnal-uaa_1 other downstream 724860 24306611 ~ 24306693 (+) True trnal-uaa_1

Expression Profile