RNA id: TU111583


Basic Information

Item Value
RNA id TU111583
length 200
lncRNA type sense_over
GC content 0.32
exon number 2
gene id G82811
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23909682 ~ 23973975 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttattattttttgttttaaacccCCAAAAGTAAACATAGGAATCAATTTGTCCAACTTActacaaaaacatataaaagaaaTTACCAGTCAAGTTTTGAGAGCTGTCAGGGTGCATGAAAAATGTTATACATTGGGTAAGAAGAATTGTCTCCTGTTAGGTAAGCTGATTACATGTTGTCCTCATCAGAATACAATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111588 lncRNA upstream 1074 23908338 ~ 23908608 (+) True G82814
TU111587 lncRNA upstream 4287 23904860 ~ 23905395 (+) True G82813
TU111552 lncRNA upstream 137565 23769525 ~ 23772117 (+) True G82785
TU111531 lncRNA upstream 313208 23596212 ~ 23596474 (+) True G82768
TU111529 lncRNA upstream 318789 23590500 ~ 23590893 (+) True G82766
TU111624 lncRNA downstream 162601 24136576 ~ 24138904 (+) True G82838
TU111920 lncRNA downstream 340740 24314715 ~ 24314965 (+) True G83064
TU111934 lncRNA downstream 375466 24349441 ~ 24350477 (+) True G83071
TU111933 lncRNA downstream 375554 24349529 ~ 24350535 (+) False G83071
XR_002650357.1 lncRNA downstream 383000 24356975 ~ 24367973 (+) True LOC111193226
XM_007251917.3 mRNA upstream 31912 23875534 ~ 23877770 (+) False timm9
XM_022672974.1 mRNA upstream 31912 23875722 ~ 23877770 (+) False timm9
XM_007251903.3 mRNA upstream 338993 23564126 ~ 23570689 (+) True atg14
XM_022672969.1 mRNA upstream 346632 23559052 ~ 23563050 (+) False LOC103031726
XM_007251936.3 mRNA downstream 8320 23982295 ~ 24009312 (+) False LOC103037620
XM_007251935.3 mRNA downstream 8665 23982640 ~ 24009312 (+) False LOC103037620
XM_007251925.3 mRNA downstream 38578 24012553 ~ 24019511 (+) True LOC103037301
XM_015606545.2 mRNA downstream 38578 24012553 ~ 24019511 (+) False LOC103037301
XM_022672979.1 mRNA downstream 38618 24012593 ~ 24019511 (+) False LOC103037301
TU111569 other upstream 31915 23875439 ~ 23877767 (+) False timm9
TU111570 other upstream 31915 23875439 ~ 23877767 (+) True timm9
TU111323 other upstream 678364 23230430 ~ 23231318 (+) True G82609
TU111179 other upstream 1551547 22357644 ~ 22358135 (+) True G82488
TU110179 other upstream 4236044 19673127 ~ 19673638 (+) True G81763
TU111651 other downstream 165414 24139389 ~ 24142232 (+) True G82853
trnal-uaa_1 other downstream 332636 24306611 ~ 24306693 (+) True trnal-uaa_1
trnal-uaa_2 other downstream 333376 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_3 other downstream 334833 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_4 other downstream 336438 24310413 ~ 24310495 (+) True trnal-uaa_4

Expression Profile