RNA id: TU111585


Basic Information

Item Value
RNA id TU111585
length 299
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G82811
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23909682 ~ 23973975 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatctgTCATAGTGGACATGCACCTAAGATGAAAATTTTAGGCCCCTCCATGATAtgatacttattttcctcactgtatatACATGTGTAACATCGTTTATCAGCATTGGCTCAGAATACAACTTATACCATTCCAACATGACGATCAATATTGAAGATGCGCTTGTTGGAGCCTTGCTCGTACAGTTTTGATAGGACCAACTTCTCTACTCCAAACACTACTCCATCTTTGCAGCGGATTCCAATCGCCGTGCTGCTATTTTCTACTGCCTTCATAGCATATTCAACTTGAAATACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111590 lncRNA upstream 6889 23913129 ~ 23915459 (+) True G82816
TU111588 lncRNA upstream 13740 23908338 ~ 23908608 (+) True G82814
TU111587 lncRNA upstream 16953 23904860 ~ 23905395 (+) True G82813
TU111552 lncRNA upstream 150231 23769525 ~ 23772117 (+) True G82785
TU111531 lncRNA upstream 325874 23596212 ~ 23596474 (+) True G82768
TU111624 lncRNA downstream 213716 24136576 ~ 24138904 (+) True G82838
TU111920 lncRNA downstream 391855 24314715 ~ 24314965 (+) True G83064
TU111934 lncRNA downstream 426581 24349441 ~ 24350477 (+) True G83071
TU111933 lncRNA downstream 426669 24349529 ~ 24350535 (+) False G83071
XR_002650357.1 lncRNA downstream 434115 24356975 ~ 24367973 (+) True LOC111193226
XM_007251917.3 mRNA upstream 44578 23875534 ~ 23877770 (+) False timm9
XM_022672974.1 mRNA upstream 44578 23875722 ~ 23877770 (+) False timm9
XM_007251903.3 mRNA upstream 351659 23564126 ~ 23570689 (+) True atg14
XM_022672969.1 mRNA upstream 359298 23559052 ~ 23563050 (+) False LOC103031726
XM_007251931.3 mRNA downstream 17050 23939910 ~ 24009312 (+) False LOC103037620
XM_007251933.3 mRNA downstream 17051 23939911 ~ 24009312 (+) False LOC103037620
XM_007251937.3 mRNA downstream 17051 23939911 ~ 24009312 (+) False LOC103037620
XM_007251932.3 mRNA downstream 17051 23939911 ~ 24009312 (+) False LOC103037620
XM_022672975.1 mRNA downstream 17051 23939911 ~ 24009312 (+) False LOC103037620
TU111581 other upstream 1650 23909682 ~ 23920698 (+) True G82811
TU111569 other upstream 44581 23875439 ~ 23877767 (+) False timm9
TU111570 other upstream 44581 23875439 ~ 23877767 (+) True timm9
TU111323 other upstream 691030 23230430 ~ 23231318 (+) True G82609
TU111179 other upstream 1564213 22357644 ~ 22358135 (+) True G82488
TU111651 other downstream 216529 24139389 ~ 24142232 (+) True G82853
trnal-uaa_1 other downstream 383751 24306611 ~ 24306693 (+) True trnal-uaa_1
trnal-uaa_2 other downstream 384491 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_3 other downstream 385948 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_4 other downstream 387553 24310413 ~ 24310495 (+) True trnal-uaa_4

Expression Profile