RNA id: TU111590


Basic Information

Item Value
RNA id TU111590
length 553
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G82816
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23913129 ~ 23915459 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttgctctctgcctgtttctttcgtttagcacaaccactttcataactccgcttcattttcactgtgacagCTGTCACTCTAGGTGAAAATCAAGATCAGGTGAAAATCTAGGTGAAATGaagatcaggtggaaaacacaattttagttcagtgatcagggttaagaaactgctttaaactacaaacataaagtactgtactaaattctgactatccactacatctggccttGACTccctatctagctaattccaaactcaagctaactcactaacacagctgcagtttattaatcacagtgggtttaatctgtgtgctgatacaagaagtgtatttttaaccagctatcagaaacatatcatcacagtttacgtgtttagcctaccgttatctttttttgagaaaaatctccgtatatccagatctgtttttaaatcagctgaagctgctgcgtccgatcccgctgctaaatctcacaacaagggaggggcttcccccgcgcgccgcaaaaacagcaagctgattggctgtttctactgagaggcgggactt

Function

GO: NA

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism
ko04966 Collecting duct acid secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111588 lncRNA upstream 4521 23908338 ~ 23908608 (+) True G82814
TU111587 lncRNA upstream 7734 23904860 ~ 23905395 (+) True G82813
TU111552 lncRNA upstream 141012 23769525 ~ 23772117 (+) True G82785
TU111531 lncRNA upstream 316655 23596212 ~ 23596474 (+) True G82768
TU111529 lncRNA upstream 322236 23590500 ~ 23590893 (+) True G82766
TU111585 lncRNA downstream 6889 23922348 ~ 23922860 (+) False G82811
TU111624 lncRNA downstream 221117 24136576 ~ 24138904 (+) True G82838
TU111920 lncRNA downstream 399256 24314715 ~ 24314965 (+) True G83064
TU111934 lncRNA downstream 433982 24349441 ~ 24350477 (+) True G83071
TU111933 lncRNA downstream 434070 24349529 ~ 24350535 (+) False G83071
XM_007251917.3 mRNA upstream 35359 23875534 ~ 23877770 (+) False timm9
XM_022672974.1 mRNA upstream 35359 23875722 ~ 23877770 (+) False timm9
XM_007251903.3 mRNA upstream 342440 23564126 ~ 23570689 (+) True atg14
XM_022672969.1 mRNA upstream 350079 23559052 ~ 23563050 (+) False LOC103031726
XM_007251931.3 mRNA downstream 24451 23939910 ~ 24009312 (+) False LOC103037620
XM_007251933.3 mRNA downstream 24452 23939911 ~ 24009312 (+) False LOC103037620
XM_007251937.3 mRNA downstream 24452 23939911 ~ 24009312 (+) False LOC103037620
XM_007251932.3 mRNA downstream 24452 23939911 ~ 24009312 (+) False LOC103037620
XM_022672975.1 mRNA downstream 24452 23939911 ~ 24009312 (+) False LOC103037620
TU111569 other upstream 35362 23875439 ~ 23877767 (+) False timm9
TU111570 other upstream 35362 23875439 ~ 23877767 (+) True timm9
TU111323 other upstream 681811 23230430 ~ 23231318 (+) True G82609
TU111179 other upstream 1554994 22357644 ~ 22358135 (+) True G82488
TU110179 other upstream 4239491 19673127 ~ 19673638 (+) True G81763
TU111651 other downstream 223930 24139389 ~ 24142232 (+) True G82853
trnal-uaa_1 other downstream 391152 24306611 ~ 24306693 (+) True trnal-uaa_1
trnal-uaa_2 other downstream 391892 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_3 other downstream 393349 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_4 other downstream 394954 24310413 ~ 24310495 (+) True trnal-uaa_4

Expression Profile