RNA id: TU111998


Basic Information

Item Value
RNA id TU111998
length 1978
lncRNA type inter_gene
GC content 0.40
exon number 13
gene id G83120
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24630873 ~ 24635198 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCAAATCAAGAGACAAGTGGCTTAAGTTTATTTCCGACAAAACATAACCACTTGTTTAACACCTTTCCAGCTCTAATTGTTTTTTCAAAATAAGACACAACACAGGGCAGCCAAACATAACAAAGGTCATTTGCATACATCAGTCTAAAAGGCACCATCAGAAAACCAGCCTTCAGTCTGGAAATGGTCATAAGATAAAACGGAAATTAACCAATTTGGCACATAAAGCCACAAAATGATCAAATCAAAATCCAAGACAAATGCTGgatgcttaaaatattaaatgcttaaaataccTCTTCTGCATTTGTGCGTcatttaaatacagaaaattcaTGTCTGCTAAACAGCTACAGAAAGGAGTTTTGTCCcatttatgtaataaaataaattataacctGTGGATAAAAAGTCAAGCAAtgagtaaaaataatttaaaccttTTCTGCACCTGTACCTTGACTTAACACTGTATATGGAATATACTAGAGTAAGTAGAGAtgataaagtaataaatatattcttaaagGCAAGTCTCTGGCAAGACCCTTCTTACATTCCTTTTAAGAAAGATGTCCAAAATATAAAGTGCAGCAGAGCAGTGTAAAGTTTTGATTAAAATATTGTTCATAGTGTTCTGATAAGAGGCATCCACTGAAATATTCAGTCTGTATTGGAGTGTGCTATGAAGAGCTCCGATCACCTTCCACCCAGTACTCTTCTGTCTGCATCTCTGTGAGGCGAGACACTGTCCTCTGAAAAGCAAACACTTCTTCCTCTCCTGTGAAGATTGATAGTGAACTTGCCGAATCCCTTTTTAAGCCCAGGTCATCGATTAAGATGTGGCTCTCATCCTCGTGGTGTCCCTCATTTACAAACAGCTCCTCTAGTGGTGCCTCAGCCTCCAACACCACGCGCACCTTATGATCATAAAATGCATCAATAAGTGTGATGAAGCGCCTGGCCTGGGTCTTCTTATTCAAAGTCAGTAGAGGTATGTTTCGAATAAACACTGTGTCAAACACTGTGGACATTTCTAAGTAGTCGCTGGCTCCTAAAGGCCTATCACACAGCTCCTCAAAAGTGCAGTCTGCAATGGTCCCACATGCTTTGTTCAGTGTTAGTGTCCTACCATGCACCTTCAGAGGTCTGGGTCGGGTTATATCATTCTGTTTGAATGCCAATTCGTCAAAGAGCTTGTCCAGTGTTGCCTGTACATTATCCTCACTGGAATGGTAGAAGAGTTTCCCCGCTGCAGGCCGATTTCTTTTGCGATAATCTATTCCAGAGTCTAGACGAAGTGTTCGGCAATAGttCTTAAGCACAGCTATGAACGGCACAAAGTTCACCCTCTGTAATCCATTCTTGTACAAATCATCTGGAGGTCTGTTGGATGTGGCGACAACTACAACACCATGGAGAAAGAGGTTTTCGAAGAGCTGCTTGAGAATCATGGCATCTGCAATGTCTGTGACCTGAAATTCATCAAAGCATAGCAAGGAAGCCTCCTCGCTGATTTCCTCTGCAACTGGTGCAATAGGATCATAGGCTTTTGCCATTTTCCCTGCCTTTCTCTTGGGCAAGCTCTGTTTTAGGCGATGAATCCTTTTGTGTACATCTATCATAAATCCATGAAAGTGGACCCTCTTTTTATTCGACATCTCCACATGACTGTAAAACATGTCCATCACCATAGTTTTACCAGTGCCTACATCCCCATAAATATAGACGCCTTTTGGTGGTTTCTGTTTAGAAAATAGtttggaaaaaaaagactcGGGATGGTTGTTGTATCCTTTGAGTTTCTTCTGCATAAGATCTAATTCTTGCAGAACAGCTCTTTGTTGCTGGTCCTCTTGTAATAATCCACTCTGGATTAGATTGTTGTAATGTTCTAAAGGGCCGCTAAAAGAACGGCTAGGAATGTTTGTTGGAACACTGTCTTCAATGGGCTGAGACAGTACACTTGATGCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111994 lncRNA upstream 10936 24619695 ~ 24619937 (+) True G83116
XR_002650358.1 lncRNA upstream 54322 24572328 ~ 24576551 (+) True LOC111193227
XR_002650357.1 lncRNA upstream 262900 24356975 ~ 24367973 (+) True LOC111193226
TU111933 lncRNA upstream 280338 24349529 ~ 24350535 (+) False G83071
TU111934 lncRNA upstream 280396 24349441 ~ 24350477 (+) True G83071
TU112002 lncRNA downstream 1408 24636606 ~ 24636882 (+) True G83121
TU112004 lncRNA downstream 7194 24642392 ~ 24642655 (+) True G83123
TU112060 lncRNA downstream 136684 24771882 ~ 24772793 (+) True G83167
TU112074 lncRNA downstream 203332 24838530 ~ 24840128 (+) True G83180
TU112240 lncRNA downstream 258045 24893243 ~ 24893639 (+) True G83295
XM_022673002.1 mRNA upstream 40422 24576890 ~ 24590451 (+) True LOC103025610
XM_007251978.3 mRNA upstream 70174 24551942 ~ 24560699 (+) True LOC103024245
XM_007251973.3 mRNA upstream 79389 24460588 ~ 24551484 (+) False LOC103022677
XM_007251989.3 mRNA downstream 8492 24643690 ~ 24656092 (+) True LOC103027217
XM_022673008.1 mRNA downstream 35424 24670622 ~ 24673463 (+) True LOC111188244
XM_022673007.1 mRNA downstream 38242 24673440 ~ 24679240 (+) True LOC103027511
XM_007287815.3 mRNA downstream 46988 24682186 ~ 24685860 (+) True ankrd66
XM_007251994.3 mRNA downstream 91020 24726218 ~ 24730018 (+) True LOC103029186
trnal-uaa_4 other upstream 320378 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 321983 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 323440 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 324180 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 488641 24139389 ~ 24142232 (+) True G82853
trnal-cag_10 other downstream 192476 24827674 ~ 24827756 (+) True trnal-cag_10
TU112274 other downstream 299875 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 394839 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1284359 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1600300 26235498 ~ 26249096 (+) False G83602

Expression Profile