RNA id: TU112188


Basic Information

Item Value
RNA id TU112188
length 861
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G83260
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24771882 ~ 24772742 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttacaactggtgttggcacaaagcagctttacagagacgtgatcacaggacaaagaatcaggcaaaatattaaacatagaaaaatacagaatacagaaccccagtgagcgcggggtgaagaacagggtgaaaggaggttAACAAAGTGTGCTGATAAACAGATGGACTAGCATCTGTAAGTTCTCCTATTTGTTCAACGGAGCAGAAAAAGTGGCCAAGGAGTGTAAAAAAtggattattaatattttgatttgaCTGTGtagtaataaaatgattaaaacctGGAGGAATGATACTGTATCTATACACAGGGCTGCCATTTTGAAGATGGGCTAACTGCAGCTCCTGCATTTCCAGCATCCTGATTATTCCTGTCAAGAAGATGAACGCAGCTGTGGTTTAATAGCCAGCATCATAACTCTCTGTTTGCAGACAGCCACCCTGAAGCTGGCAGAACTGATAGTGGCCCAAATGACCCTGAAACTCATTTATTACCCTGCAATGTGTCGCTGAGACTGCAGAAGGGCAGCATTGTTATTAAACTAAGGTATTAGTTTATGTTTAGGCATAGAATGAGTGTGCATGTTTATATGGtaccaataatatatattttgctgaAAACTCTTAGATAGGCAGTTCTATTAGAATGTTTTGCAGGACTCTTTAAGTGGACTGCGCTGCTGACGTTCACAggggacacaaaaaaaaagcctggTTCATAGCCGCCTGTTCAGGAAATGGTTCTGCTTCCAAAGAAAACCTTCAGCAGTGTgcacttctctctcttctcgctTTTTAAAATGCTGTCCTCCCTGCAATgtgtcatatttatatttatatatatatatatatatatat

Function

GO:

id name namespace
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112183 lncRNA downstream 839 24765935 ~ 24771043 (-) True G83259
TU112185 lncRNA downstream 2572 24765935 ~ 24769310 (-) False G83259
TU112153 lncRNA downstream 7561 24763896 ~ 24764321 (-) True G83236
TU112175 lncRNA downstream 30883 24736704 ~ 24740999 (-) True G83254
TU112174 lncRNA downstream 30883 24737649 ~ 24740999 (-) False G83254
TU112202 lncRNA upstream 28585 24801327 ~ 24857856 (-) True G83271
TU112211 lncRNA upstream 40605 24813347 ~ 24813809 (-) True G83279
TU112236 lncRNA upstream 101514 24874256 ~ 24875186 (-) True G83291
TU112239 lncRNA upstream 109965 24882707 ~ 24882844 (-) True G83294
TU112251 lncRNA upstream 123154 24895896 ~ 24896616 (-) True G83300
XM_022673013.1 mRNA downstream 9133 24759382 ~ 24762749 (-) False LOC103031209
XM_022673012.1 mRNA downstream 9137 24759382 ~ 24762745 (-) False LOC103031209
XM_022673011.1 mRNA downstream 9137 24759382 ~ 24762745 (-) False LOC103031209
XM_022673014.1 mRNA downstream 9292 24759382 ~ 24762590 (-) True LOC103031209
XM_007252004.3 mRNA downstream 9293 24759382 ~ 24762589 (-) False LOC103031209
XM_007252010.3 mRNA upstream 22007 24794749 ~ 24797199 (-) False LOC103033209
XM_022673017.1 mRNA upstream 22007 24794749 ~ 24796831 (-) True LOC103033209
XM_015606496.2 mRNA upstream 53423 24826165 ~ 24828725 (-) False LOC103035756
XM_007252019.3 mRNA upstream 53423 24826165 ~ 24828723 (-) False LOC103035756
XM_022673021.1 mRNA upstream 53423 24826165 ~ 24827717 (-) False LOC103035756
XR_002650359.1 other downstream 136001 24630879 ~ 24635881 (-) False LOC103026430
TU111816 other downstream 754226 24012634 ~ 24017656 (-) True G82991
TU111392 other downstream 2147173 22622355 ~ 22624709 (-) False tex36
TU111062 other downstream 2693021 21946740 ~ 22078861 (-) True LOC103042297
TU112362 other upstream 264493 25037235 ~ 25041018 (-) False LOC103040243
TU112655 other upstream 1219757 25992499 ~ 26003685 (-) True G83612
TU112771 other upstream 1661730 26434472 ~ 26470163 (-) True cga
TU113207 other upstream 3062040 27834782 ~ 27838795 (-) False LOC103043566
TU113436 other upstream 3571847 28344589 ~ 28356545 (-) True G84215

Expression Profile