RNA id: TU112202



Basic Information


Item Value
RNA id TU112202
length 236
lncRNA type read_through
GC content 0.47
exon number 2
gene id G83271
representative True

Chromosome Information


Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24801327 ~ 24857856 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AAGGCCAAGAGCCTTTAAGCATTTTCTTTTCGAGCTTCTGATCCTTGGCCTTGCCAGGCTCTTTTATTTCTGTGAGTGGCTCCTCCTCTGGCTCTTCAGTCTCAGGCGGCTTCTCTGTGTCCTGAAAGGTGTTGATGATATCCTCTAATTGTTTACTCAGGTCTTCAGTGAGGTCACTCTTAGGGGCCTGTAGATCTACAGGTTGGCTGCAACTCTCCATTCTTAGAAAATACTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU112188 lncRNA downstream 28585 24771882 ~ 24772742 (-) True G83260
TU112183 lncRNA downstream 30284 24765935 ~ 24771043 (-) True G83259
TU112185 lncRNA downstream 32017 24765935 ~ 24769310 (-) False G83259
TU112153 lncRNA downstream 37006 24763896 ~ 24764321 (-) True G83236
TU112175 lncRNA downstream 60328 24736704 ~ 24740999 (-) True G83254
TU112236 lncRNA upstream 16400 24874256 ~ 24875186 (-) True G83291
TU112239 lncRNA upstream 24851 24882707 ~ 24882844 (-) True G83294
TU112251 lncRNA upstream 38040 24895896 ~ 24896616 (-) True G83300
TU112266 lncRNA upstream 74062 24931918 ~ 24932189 (-) True G83309
TU112270 lncRNA upstream 76321 24934177 ~ 24934642 (-) True G83313
XM_007252010.3 mRNA downstream 4128 24794749 ~ 24797199 (-) False LOC103033209
XM_022673017.1 mRNA downstream 4496 24794749 ~ 24796831 (-) True LOC103033209
XM_022673013.1 mRNA downstream 38578 24759382 ~ 24762749 (-) False LOC103031209
XM_022673012.1 mRNA downstream 38582 24759382 ~ 24762745 (-) False LOC103031209
XM_022673011.1 mRNA downstream 38582 24759382 ~ 24762745 (-) False LOC103031209
XM_007252026.3 mRNA upstream 25049 24882905 ~ 24891194 (-) True LOC103037621
XM_022673026.1 mRNA upstream 82182 24940038 ~ 24954966 (-) False LOC107197685
XM_022673025.1 mRNA upstream 82182 24940038 ~ 24954966 (-) False LOC107197685
XM_022673024.1 mRNA upstream 82182 24940038 ~ 24954966 (-) False LOC107197685
XM_022673023.1 mRNA upstream 82182 24940038 ~ 24954966 (-) False LOC107197685
XR_002650359.1 other downstream 165446 24630879 ~ 24635881 (-) False LOC103026430
TU111816 other downstream 783671 24012634 ~ 24017656 (-) True G82991
TU111392 other downstream 2176618 22622355 ~ 22624709 (-) False tex36
TU111062 other downstream 2722466 21946740 ~ 22078861 (-) True LOC103042297
TU112362 other upstream 179379 25037235 ~ 25041018 (-) False LOC103040243
TU112655 other upstream 1134643 25992499 ~ 26003685 (-) True G83612
TU112771 other upstream 1576616 26434472 ~ 26470163 (-) True cga
TU113207 other upstream 2976926 27834782 ~ 27838795 (-) False LOC103043566
TU113436 other upstream 3486733 28344589 ~ 28356545 (-) True G84215

Expression Profile