RNA id: XM_007252027.3


Basic Information

Item Value
RNA id XM_007252027.3
length 2020
RNA type mRNA
GC content 0.48
exon number 19
gene id ephx2
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24895894 ~ 24924815 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATTAGCCTTCCCTCTAAACTCTGCTCTATATTAAACAAGTTTATAAGGTGACTTTCTGTCACTTATTCTTTACCGCACAGCCTCGGCATTCACAAACTTTCTCCTCGGGGTTAAAGCTCAATGTTTAAGGCTGTGTTTTTCGGGCTGTGGGGTGGGGTGGTCACCCCTCACCCGCTGCTGGCTTTCCGTAAAGTGGAAAACGCTCTCAAACTGCCAAGGGATTTCATTCTGAACACCATTCTGAAGGCAGGGAGTGAGGGTGCTGTGTTTCGAGCTGACCGAGGAAAGCTCACCCTTACACAGATGTTCCCTGAGCTGGAGGCTGAGTGTCAGAAGGAAGCTGCCAGTCAGGGACTCTCTCTGCCTGCCCACTTCTCAGCCCAGAAGCTCTTTGATGAGGTGGTTCAGGTGGAGTTCAACGGGCCGCTGCTGGATGCTGCTGCCACTCTTCAGCGCCAGGGCATAAGAACCTGTGTCCTGGCCAATATGTGGATTGATGACAGCCCTCAGAGGGACAGTATTGCTAAAATTCTCCATGTCTTGGAAAACCGCTTTGATCTGGTGGTGCGATCCAGCCAAATTGGGGCAAAGCTCCCTGAAGCTGCTGTGTTCCAGTCGGCCTTGGATCAATTGCATGTTAAACCCAAAGAGGCTCTCTGGTTGGATGTATCTGAGGAAAGTGTGAAGACAGCTGAGAGCTTGGGCATGGCTGCTGTTCACATAACTGAGATCAGTGAAGCAGTGAAGAAGATGGAAACACTTACTGGGATAAAGCTTACAGTTGAGCAGTTGCCACGTGCTTGTGATGCTGAGAAAGTCAGCCATGGATATGTTACTGTCAAGCCTGGGGTGAAGATCCATTATGTGGAGATGGGGGATGGGCCTCCTGTTCTGCTTTGCCATGGGTTCCCTGAAAGCTGGTATTCCTGGAGGTACCAGATTCCAGCTTTGGCTGATGCGGGGTTCAGGGTTATTGCTCCTGACATGAAAGGCTATGGTGACTCCTCTGCTCCAGCAGATATTGAGGAATATTCACAAGAAAATATTGTAAAGGATCTGGTGACGTTCATGGATAAGTTGGGTCTTGCTCAGGTTACTCTGTTTGGGCACGACTGGGGTGGTTCGGTGGCTTGGAACATGGCTCAGTGTCATCCAGAGAGACTGAGGGCTGTTGCTTCTCTCAACACTCCTCTATTTCGTGTTGATCCAGACACAAATCCAATGGAACGACTGAAGGCTATGCCCATTTTtgactatcaaatatactttcaGGAGCCTGGTGTGGCGGAGGCTGAGCTGGAGAGAAACCTGGCCAGGACTTTTAAACTGATGTTCACTGCTAGTAGTGAAAAAGGCCTTCTGAAAGGGGGCACTGCTGGAGTCTGTAAAAGAGGGGGGTTGTTTGTTGGGTCACCAGAGGATGTCCCCAGAAGCTCCATGCTAAGTGAGGAGGATCTGCAGTACTATATGCAGCAGTTCAGTAAGAGTGGCTTCAGGGGTCCTCTCAACTGGTATCGAAATGTGGAGAGGAACTGGCGCTGGCTGTGCTCAAGGCCAAGGGGCAAGATCCTGATGCCAGCGCTGATGGTGACTGCAGGGAAAGATAAAGTGCTTCTGCCCAGCTTCAGCACTGGCATGGAGAACATGATTCCTAATTTAACTAGAGGCCATATTGAAGAATGTGGACACTGGACCCAGATGGAGAGGCCAGCTGAACTCAATAAAATCATCATCTCTTGGCTGAAAGACACCCATGAGAAAGCATCCATATCATTCTCTCCAAAACTGTGAGATGACTCTTTATTTGGAAATGAAGTTTGGGAACGGACAACCTCAGCTTGGATACAGCAGCCCTTCATATTCAGTAatcattttctgctttttacaGTACTATGCACTAATAAAGCACTGCATTACTTCTCCACATGATAttagtttacttttaaaatgaactttaaattatgcattttaaatttcaaaccacacattttattaaaagcttTGTGCATTGCAAAACAA

Function

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0060841 venous blood vessel development biological_process
GO:0004301 epoxide hydrolase activity molecular_function

KEGG:

id description
K08726 EPHX2; soluble epoxide hydrolase / lipid-phosphate phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112240 lncRNA upstream 2255 24893243 ~ 24893639 (+) True G83295
TU112074 lncRNA upstream 55766 24838530 ~ 24840128 (+) True G83180
TU112060 lncRNA upstream 123101 24771882 ~ 24772793 (+) True G83167
TU112004 lncRNA upstream 253239 24642392 ~ 24642655 (+) True G83123
TU112002 lncRNA upstream 259012 24636606 ~ 24636882 (+) True G83121
TU112264 lncRNA downstream 7106 24931919 ~ 24932539 (+) True G83307
TU112322 lncRNA downstream 203147 25127960 ~ 25132154 (+) True G83354
TU112323 lncRNA downstream 203147 25127960 ~ 25187909 (+) False G83354
TU112325 lncRNA downstream 236105 25160918 ~ 25167969 (+) False supt3h
TU112432 lncRNA downstream 436914 25361727 ~ 25367281 (+) True G83438
XM_007252023.3 mRNA upstream 13142 24849576 ~ 24882752 (+) True ptk2b
XM_007252024.3 mRNA upstream 13142 24849576 ~ 24882752 (+) False ptk2b
XM_007252025.3 mRNA upstream 13142 24849576 ~ 24882752 (+) False ptk2b
XM_022672484.1 mRNA upstream 69794 24814910 ~ 24826100 (+) True LOC103046279
XM_007252011.3 mRNA upstream 82085 24807926 ~ 24813809 (+) True LOC103033951
XM_022673022.1 mRNA downstream 9351 24934164 ~ 24936186 (+) True LOC111193228
XM_007252055.3 mRNA downstream 56563 24981376 ~ 24997874 (+) True gckr
XM_015606535.2 mRNA downstream 73522 24998335 ~ 25008777 (+) True LOC103039108
XM_007252037.3 mRNA downstream 105184 25029997 ~ 25034013 (+) False c9h8orf74
XM_007252036.3 mRNA downstream 105185 25029998 ~ 25034013 (+) True c9h8orf74
trnal-cag_10 other upstream 68138 24827674 ~ 24827756 (+) True trnal-cag_10
trnal-uaa_4 other upstream 585399 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 587004 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 588461 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 589201 24306611 ~ 24306693 (+) True trnal-uaa_1
TU112274 other downstream 10260 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 105224 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 994744 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1310685 26235498 ~ 26249096 (+) False G83602
XR_002650363.1 other downstream 1468077 26392890 ~ 26399267 (+) False spata7

Expression Profile