RNA id: TU112266


Basic Information

Item Value
RNA id TU112266
length 272
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G83309
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24931918 ~ 24932189 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tactTGTGGCGGCCTCTTCCCTTATGGTGGAGGGAGGTGGGAGGGGCTCCTGCTGGTGAAGAAGTCGAGAGCGGAGCTGTCTGTCCGGTGGTTTAGGAGCTTGTCTCTTCTTTTTGGGTTGTGGGGggagtttgtttaatacttccTCATGTTCATGTTCACTGGGCTTCATTTTGGTCCCCTTTTCTAACTCCTTGATTGGGGAGTGTAGtggtggtgaggatgggggTTGCTGGGTCCGTGAGGCAgtaggtgactgtggaggagaagTT

Function

GO:

id name namespace
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112251 lncRNA downstream 35302 24895896 ~ 24896616 (-) True G83300
TU112239 lncRNA downstream 49074 24882707 ~ 24882844 (-) True G83294
TU112236 lncRNA downstream 56732 24874256 ~ 24875186 (-) True G83291
TU112202 lncRNA downstream 74062 24801327 ~ 24857856 (-) True G83271
TU112211 lncRNA downstream 118109 24813347 ~ 24813809 (-) True G83279
TU112270 lncRNA upstream 1988 24934177 ~ 24934642 (-) True G83313
TU112276 lncRNA upstream 3928 24936117 ~ 24936621 (-) True G83316
TU112349 lncRNA upstream 57629 24989818 ~ 24991371 (-) True G83373
TU112351 lncRNA upstream 63753 24995942 ~ 24996155 (-) True G83375
TU112352 lncRNA upstream 64798 24996987 ~ 24998104 (-) True G83376
XM_007252026.3 mRNA downstream 40724 24882905 ~ 24891194 (-) True LOC103037621
XM_015606498.2 mRNA downstream 85901 24830960 ~ 24846017 (-) False LOC103035024
XM_022673026.1 mRNA upstream 7849 24940038 ~ 24954966 (-) False LOC107197685
XM_022673025.1 mRNA upstream 7849 24940038 ~ 24954966 (-) False LOC107197685
XM_022673024.1 mRNA upstream 7849 24940038 ~ 24954966 (-) False LOC107197685
XM_022673023.1 mRNA upstream 7849 24940038 ~ 24954966 (-) False LOC107197685
XM_022673027.1 mRNA upstream 7849 24940038 ~ 24948180 (-) True LOC107197685
XR_002650359.1 other downstream 296037 24630879 ~ 24635881 (-) False LOC103026430
TU111816 other downstream 914262 24012634 ~ 24017656 (-) True G82991
TU111392 other downstream 2307209 22622355 ~ 22624709 (-) False tex36
TU111062 other downstream 2853057 21946740 ~ 22078861 (-) True LOC103042297
TU112362 other upstream 105046 25037235 ~ 25041018 (-) False LOC103040243
TU112655 other upstream 1060310 25992499 ~ 26003685 (-) True G83612
TU112771 other upstream 1502283 26434472 ~ 26470163 (-) True cga
TU113207 other upstream 2902593 27834782 ~ 27838795 (-) False LOC103043566
TU113436 other upstream 3412400 28344589 ~ 28356545 (-) True G84215

Expression Profile