RNA id: XM_007252037.3


Basic Information

Item Value
RNA id XM_007252037.3
length 1041
RNA type mRNA
GC content 0.46
exon number 5
gene id c9h8orf74
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 25029997 ~ 25034121 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACGCGCACCAAAATCAGAGCGCGCCCGTCACTAGGCAACAAGAACGCCCCTAACAACGCCGCCAGCAGCAGACATGGCAACGGCCTCGACCGAGAACGTGCTGAAAGAGTTATCGAGACTGGAGAGGGATGAAGGCATCCAGCGCCTGAGCTTCTGCTTTCAGTGGAGGGAGTTTGAAGGCGACGAGCAGAGACagtatttgcaccaggagtttgTGTATGAGAATGTAATGTATTCTGTAAAGCGTGGGCTTCCATGGTCTTCAGTGGCACAAGTAGCGAGTATGACTAAAGAGCTCCTCCCTGAGCTTAAAGGTCTGGAGAGATCTGAAGTCATTTCCCTGATCCGGACACGACTGTCACAGCATCAGCTCCAGCTCTCGCCGGCTCATCGCGCTGTCCTCTATGACTTCATTCTGGAGATCCATATTCCACCACATCCCCCACCCCTCTGCGAGGGAACTGATGTGGTGGTGTGGGAGAAGCAGCAGGCTTTGAGAGAACTCACAGCAGccgaggctgagaaacagtcaGAACTCCAAAGACTCCGAGAGCAGGCCGAGACAGAGCTGATGGCAAAACTACAGGAGAGGCTGGGTGATTTATTAGTGGAGAACAGACTAGACAGACAGGAAGTGCAAACCACCGTCCGCACCTTTCTGCAGTCACAAGGAGAATTTTTTAAGGATAATTTAGAGAAGGAAATCAGAACAGTACAGGAACTGCTGGAAATAAAAATGCGTCAAAAGTCTCTTTTAGGAAGAGGACCATCTTCAAACACATCCAGCTTCTCTGAAAAACTGTCTGTACCAAGCTCCACAAAAGTCAAGAAGTCAAAAAAATGAAGTCAACAAGagacttccttttttttttgttaattatgtatagaattctgttttttggaaaaCACTTgtttcacaattatttttttctggtgtgCTTGGGAATTGGATGTGGATAGATTTTAAGAAAAAGGCAAACTGCACAAAAAGTTATGTTTTATGtgacaacaataaataaaaacaaccaaaTGGCAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112264 lncRNA upstream 97458 24931919 ~ 24932539 (+) True G83307
TU112242 lncRNA upstream 105182 24918425 ~ 24924815 (+) False ephx2
TU112240 lncRNA upstream 136358 24893243 ~ 24893639 (+) True G83295
TU112074 lncRNA upstream 189869 24838530 ~ 24840128 (+) True G83180
TU112060 lncRNA upstream 257204 24771882 ~ 24772793 (+) True G83167
TU112322 lncRNA downstream 93947 25127960 ~ 25132154 (+) True G83354
TU112323 lncRNA downstream 93947 25127960 ~ 25187909 (+) False G83354
TU112325 lncRNA downstream 126905 25160918 ~ 25167969 (+) False supt3h
TU112432 lncRNA downstream 327714 25361727 ~ 25367281 (+) True G83438
TU112433 lncRNA downstream 327714 25361727 ~ 25363334 (+) False G83438
XM_015606535.2 mRNA upstream 21220 24998335 ~ 25008777 (+) True LOC103039108
XM_007252055.3 mRNA upstream 32123 24981376 ~ 24997874 (+) True gckr
XM_022673022.1 mRNA upstream 93811 24934164 ~ 24936186 (+) True LOC111193228
XM_007252027.3 mRNA upstream 105184 24895894 ~ 24924813 (+) True ephx2
XM_007252024.3 mRNA upstream 147245 24849576 ~ 24882752 (+) False ptk2b
XM_007252038.3 mRNA downstream 11700 25045713 ~ 25071105 (+) True xkr6
XM_007252041.3 mRNA downstream 53590 25087603 ~ 25095143 (+) True enpp4
XM_007252040.3 mRNA downstream 64026 25098039 ~ 25109750 (+) True clic5
XM_022673033.1 mRNA downstream 126971 25160984 ~ 25329482 (+) False supt3h
XM_022673032.1 mRNA downstream 126972 25160985 ~ 25317375 (+) True supt3h
TU112274 other upstream 94447 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 202241 24827674 ~ 24827756 (+) True trnal-cag_10
trnal-uaa_4 other upstream 719502 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 721107 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 722564 24307351 ~ 24307433 (+) True trnal-uaa_2
XR_002650360.1 other downstream 885544 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1201485 26235498 ~ 26249096 (+) False G83602
XR_002650363.1 other downstream 1358877 26392890 ~ 26399267 (+) False spata7
trnay-gua_9 other downstream 1474027 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 1693810 26727823 ~ 26747751 (+) False fermt2

Expression Profile