RNA id: TU112455


Basic Information

Item Value
RNA id TU112455
length 1952
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G83456
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 25517590 ~ 25537270 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTACAGGTATCGTCTTGACTTTCACAGCTCCCTGGACTGACCTTTCCCTGTGAAATGGATTAACATGGAAGAAGACTCTGCTGGACTTGGACACTCCAGGACTGGAACGGCCTCTTCCTGTTCTTAAGgttTACCTCGCGGCAGAGGCTTTCTGAGGCTGGGTGAAGCAGATGCCTCGCAGAGCAGAAGGCAGCGAGAGCCGCTATTAACCGCCAGCTGCGCTCCAACCAACACATCGCAGTCCACTGAGAGCAGAGATTGGAGTGGAAACCAGAGAAGCGAGCGCGCAAAGAGACTTTCAATTAAGAAAActgtcaaaaagaaaaaaatgtttggggCTGCCTTTGCTGCTTCGGTTCGATGCAGCTGCACCAAAAGCAAAAACTCCAGAACGACTGAAAAGGAGCTACTGGGAGCTGGTGGAgagctgcgaaagagagagagagagagatagagatgaaGGCGCAGGAGGAAGGAAAATTATCAGCTCTTTTAATCCCATGGTGTGTTGAGCTAGCGCAGCCGGGTGCTCTATCTCAGTGTGCCACAATGAGCGCTAGCTTTGGCTACCTCCAGGAGCTGAAATCCAAGTGCCGTGCTTAATGATTCATTTGTAGGGCAGCTCAGAAACAACCAGCGCTCCCTCACCGCTATAGTTCTCTGGGAAACGAACACAAGGGAGCTGCAGGATTCAAAAACAGCCGCAAAGCCTTGAACTGAGAGTTTTAGGGAGCTCAGTAATTCTTCAAAGAGAAATCAAGTGGTGAACAGTGTGATAATGTgacatatttttaacatatgGAAACGTAGAGGGAATTTGAGGAGGGAACAGCCTAAAAAGCTTATATTGGTGCCAATATTGgagttttattgtttcttttgtaAACCACAAAgcagatgctgctggtcactATCATTACCATACACTATATGATgtacactgtgggtggtaatgttttTTATGATGTATTTCTGGTACTCGTGTGACTCATAGATCGATGAATGTTAAGTGTCTGTATGATTGAGCACATAAGTACACAATGTACAGGTCTGGTCATTTAAAGCCATGCCCTTGAAGCAACACTTAATAaatgatttacttttttttttttttttaataagctgggtgtcatttaaataatttcaatAATGGATCGGTCCCATTATTGAAAGATTCccagcttattaaaaacacccaaacaatacttttttcgaatcctttttctaaaatataaaaacgataattattattacacaacatatttatttaccagccaacatgagtaatctcattctcatactatCACCAGTAGAGGCTCCATCATTTTGGATCTTAATAAAGTCgtggcactttattaagaacaaaaaccaTGTTTCCTTGTTGGTGTGATCCATGCATAGTATCCAAAACAGGTACCAAAATATTTTCAGTACTTTCAGACATTTTGGTCGGTGTCTTTTTGATATCAAATTGCAATACATAGCCCTACCCAGGATTAAATGTACCTAATTAATGATGTGAAACTTCTGATCTTTCTGGATTCTTATCTTACTTTGTTTTTACGTCAGTCAGCATTACCATATCTGTTAATAACTTCATTAATTTAACTACCCAGCTTAATTATGTATACAGTAAGCACAATGTGGTGTATACTAACATATTAAATAACttaactgactttctatattattttataaagatATGTTCATGTTGACCGATGAAAAAGTTAAAGTAAGCATCcagtaagatctgaggtttcagagtataaataaatgtagaatcactatttggcaaacaaaagGTCACTTTTGCCCATTTCTAATtattatgtgttgtaactgcttattaattaaACTGCccattacagtatttacaatataattCATCAACATTAATGaacttctttaaaatatatatatatatataaaccctttataaagaagacttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112448 lncRNA upstream 21930 25495158 ~ 25495660 (+) True G83449
TU112445 lncRNA upstream 53337 25463900 ~ 25464253 (+) True G83446
TU112437 lncRNA upstream 130000 25370251 ~ 25387590 (+) True G83440
TU112439 lncRNA upstream 138299 25378571 ~ 25379291 (+) True G83441
TU112432 lncRNA upstream 150309 25361727 ~ 25367281 (+) True G83438
TU112538 lncRNA downstream 261190 25798460 ~ 25802452 (+) True G83522
XR_002650361.1 lncRNA downstream 447411 25984681 ~ 25993012 (+) True LOC111193229
XR_002650362.1 lncRNA downstream 447411 25984681 ~ 25993012 (+) False LOC111193229
TU112638 lncRNA downstream 697646 26234916 ~ 26235175 (+) True G83601
TU112639 lncRNA downstream 698228 26235498 ~ 26253602 (+) True G83602
XM_022673033.1 mRNA upstream 188108 25160984 ~ 25329482 (+) False supt3h
XM_022673032.1 mRNA upstream 200215 25160985 ~ 25317375 (+) True supt3h
XM_022673038.1 mRNA upstream 200215 25160985 ~ 25317375 (+) False supt3h
XM_022673039.1 mRNA upstream 200215 25160986 ~ 25317375 (+) False supt3h
XM_022673036.1 mRNA upstream 200215 25167147 ~ 25317375 (+) False supt3h
XM_022673046.1 mRNA downstream 130429 25667699 ~ 25683838 (+) False mcm8
XM_022673049.1 mRNA downstream 130444 25667714 ~ 25683838 (+) False mcm8
XM_022673048.1 mRNA downstream 130444 25667714 ~ 25683838 (+) False mcm8
XM_022673045.1 mRNA downstream 130445 25667715 ~ 25683838 (+) True mcm8
XM_022673047.1 mRNA downstream 130445 25667715 ~ 25683838 (+) False mcm8
TU112312 other upstream 483469 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 582040 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 689834 24827674 ~ 24827756 (+) True trnal-cag_10
trnal-uaa_4 other upstream 1207095 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 1208700 24308808 ~ 24308890 (+) True trnal-uaa_3
XR_002650360.1 other downstream 382287 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 698228 26235498 ~ 26249096 (+) False G83602
XR_002650363.1 other downstream 855620 26392890 ~ 26399267 (+) False spata7
trnay-gua_9 other downstream 970770 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 1190553 26727823 ~ 26747751 (+) False fermt2

Expression Profile