RNA id: TU112638


Basic Information

Item Value
RNA id TU112638
length 260
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G83601
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26234916 ~ 26235175 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaaaaaaagatatagaaaagggtttttaatttggctgtattaaaagaatgacatatgtaggaatgtccacaacatgttcagattctgataatctaattgtagtgtgtaagtggttcacatgtggttattttagattttttgtaaacctgttttaaaatgtaagagatactgaaccttcgttgggctggtgggacggctttaagcggacagaggaaaatatcccttatttttaaatctaaaacttgacaggtatgcttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650361.1 lncRNA upstream 241904 25984681 ~ 25993012 (+) True LOC111193229
XR_002650362.1 lncRNA upstream 241904 25984681 ~ 25993012 (+) False LOC111193229
TU112538 lncRNA upstream 432464 25798460 ~ 25802452 (+) True G83522
TU112455 lncRNA upstream 697646 25517590 ~ 25537270 (+) True G83456
TU112448 lncRNA upstream 739256 25495158 ~ 25495660 (+) True G83449
TU112639 lncRNA downstream 323 26235498 ~ 26253602 (+) True G83602
TU112689 lncRNA downstream 39826 26275001 ~ 26305343 (+) False c9h14orf132
TU112700 lncRNA downstream 75534 26310709 ~ 26310948 (+) True G83649
TU112701 lncRNA downstream 90857 26326032 ~ 26327286 (+) False LOC103031022
TU112716 lncRNA downstream 104007 26339182 ~ 26339699 (+) True G83661
XM_007257438.3 mRNA upstream 259633 25919557 ~ 25975283 (+) True LOC103033015
XM_022673055.1 mRNA upstream 259633 25919557 ~ 25975283 (+) False LOC103033015
XM_022673054.1 mRNA upstream 259633 25919565 ~ 25975283 (+) False LOC103033015
XM_022673056.1 mRNA upstream 263102 25919557 ~ 25971814 (+) False LOC103033015
XM_007257442.3 mRNA upstream 318072 25835147 ~ 25916844 (+) True LOC103033987
XM_015607884.2 mRNA downstream 39845 26275020 ~ 26305383 (+) True c9h14orf132
XM_007257434.2 mRNA downstream 86010 26321185 ~ 26327338 (+) True LOC103031022
XM_007257462.2 mRNA downstream 93626 26328801 ~ 26330956 (+) True LOC103041814
XM_015607885.2 mRNA downstream 96752 26331927 ~ 26335823 (+) True LOC103041516
XM_007257461.3 mRNA downstream 115956 26351131 ~ 26352435 (+) True LOC103041211
XR_002650360.1 other upstream 262673 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 1200795 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 1299366 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 1407160 24827674 ~ 24827756 (+) True trnal-cag_10
trnal-uaa_4 other upstream 1924421 24310413 ~ 24310495 (+) True trnal-uaa_4
TU112640 other downstream 323 26235498 ~ 26249096 (+) False G83602
XR_002650363.1 other downstream 157715 26392890 ~ 26399267 (+) False spata7
trnay-gua_9 other downstream 272865 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 492648 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 492733 26727908 ~ 26747751 (+) False fermt2

Expression Profile