RNA id: XM_015607884.2


Basic Information

Item Value
RNA id XM_015607884.2
length 2883
RNA type mRNA
GC content 0.40
exon number 2
gene id c9h14orf132
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26275001 ~ 26305383 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTCTCTCGTGCGGTCCTCTCAGTAGCTTTCAGCTGGTTTAGTGATGGATCAGTAGCATCCTGAACTCCTCTCAAACCTCACGCAGCCCAATGAGCTGCTCTGGGAATACAGCCTGATACAAACACAGCTTTTACCTCCTCGCTGGATGAGATTAGTCACAATTCAACAAGATGGATCTTTCATTTATGGCAGCACAGATCCCGGTTATGACTGGAGCGTTTATGGACTCTTCGCCCAACGATGACTACAGCGCCGAGCACTCCCTCTTCAACTCGTCTGCCAGCGTGAACGCAGCCCCCATAGTCCCAGTGCAGACACAGCACGACGAGCAGCAGCACATGTCCAGCGATGCTATCTGGCTGTGGATCGCCATTGTTGCCACCATTGGGAATATTGTGGTTGTGGGAGTGGTTTACGCATTCACTTTCTGATCCCTCCATTCACAGAGGCTTCACTGCAGCCCAGCTCTAAAGGCTGAGGCTGTGCTGAATTATACATATACTGTCTACTGGCAGAGATATTGTTTATTCGGTTCTTAGCTAAACCAATCCCCGCAGATGAAACCTTCCCACCGACACCTCTATCTGGAAGCCTCCAAACCTCATGCATTAATGAGCAGTGTCCTTGTGTATAGAGGATGTTCAAAGGAATTAAATGGGCTTTACGGATTGGACCTACTTAAATGTTCCCCGGAGGTATGAGAAGCAATTAAGAGAAGTGCTGCTCAATTATTTGGATGAAGGGGCCGCAAATCTTTAAACATTAAAGCGAATCAGGTCACTGCTGTGGCATTATTTTAAGTCATGAACGTACTTGTTTTGCTGGCAAAGGATTTCAGAGGGTGTTTTGCTTGATATATAAAGTAGTTTGTAGATGAACTGACAGCTTAGTTTCATTATCATGGTAAAATAGTAAGAGAATGTGTCCTATTGCAATACaggtactgtaaaaaaaaaagtcttaaagtcttaaagaaacaacaaaatgtcttaaaatacagacataaatgtatataaagtgtACACAAAAAATTGTGCAATTTATACAAACATATTTGCTGCATTTTGTTCGTATATAATGATTGACAAGGAGCTCCCGTTCACTGGTGGTGCTGTTTTGCAAATACACAACCCAGCAAAGATGAATTGTGAAAAGAGTGCTGCTTTTCTCTGTTATGGAGCTTTTAAAGCAGAACTTAATGTAATGAAAACTCATAGAGAAACAATACAACCTTCACATTCTACTACTGCTATGTTTAGATTATTGTTTGGGTGAGGGGACATTTAATTTTAGGTTAAGATTTAGGTTTGAGGTGTGGATGCTTTGTAACATTCTTTGTTCAAATCATTTGTTTTCAGCTTTCCAAGGTTGCGTCAGAAAACGGTGTCAGAAAACATCAATATAttgaagtattgtgatatttcattttgcaatactgtagcaatttacaaaaacacagtatcagattttaagtttaattagtttagttgtaaagattggtgtcagatatgtttcattttgtgattgcagtgttgtactcttCCATTTCTTCAGATACCACTGTTCTGAttgaaaaagaaagtaaactGATCTTTAACTTAGATTTTATAAAGATGATAGTatgttttttacactataagagTTTTCCTGAAATTTGATAGCCCTTGAGGATTGACCTATATTTAGTACACATTGTACAAATCCTGATATCATCTTTTAGTTGCATATGTACTAATTCCTCTTTGAGACCGAGCTGAGCAAAAAACAAGGAGGATTTTGAATCAAAAGCCACAGTTGTGTGAACGACTGCCAAAACTTTTCGGAACAGATTGCATAAGCAAAGCACTATCTTGCACCAGGCACTTTCTCCCACCCTCTCTTCAAATTCAGAGCTGAAGCTCATTTCTGTCTGTGTTGTTCACCGAGAAATCTTGATGGCTTACGCATTCGGAGAATTGACTTCGATCAGTGTAGGTCCAGTTGTTACCAAGGCAATTAATCCTCCCTAATTACAGACTTTAAACGACTCTTCCCCAGCCAGAGGAAAGAAATCTACTGATGGAGACATCCTGGCTCTtaggtatcttattttttcagcCAGCTGTTCCCCTTATACTGGAagaggactgtgtgtgtggtggggggtaTACACTGGAGAAGCCATAAGCACACATTGTGTCCTCTTACAGATGTACTTAAGACTGGGTTGCCATGGAGAAGGCCAGAAGGGACACATTGAGATTTGTAGTAATGGTCCTGCACAGTGCCAGACCTCTAGTGGGTTCTTGGAGGGAAATCACTAGAGCTTTGCTTTGGAGTCAAATCGATGGCCAGGGCTCCACAAAAACAATGTGTATGAATATATTGGAAGTTTTGGTCATCTCTTAACAGAAATgtacaatgtttttaatgtccaataaattaaacaaacaatattTGGAATATTAAACTCACATtaattttgtacatgactgaaTTCAGTTCTGATTGATTAAGAGACTTGCTTCATTAGGTTGACACTTAAtctttcaacaagacaatggtCTGAAGAATCATACAGCCTAAAACAACACTGGAGTGGCCTACTTTGAGCCAAGTCTCTGAATGAATGTCCTTGAGTTCCCCAGTCAACATCcagacttaaaccccattgaccATCTGTGAAGGGACCCAAAAAATGCCAATTCACAGATGCTCACCATCCAAACTGACAGAGCTTCAGAGCATCTGCCTTGAAGAATTTGATGGACTGCCCAAATCCAGGTGTGCAATGCTTGTAGagacatatttgcatatttgcaagAAGATTTACAGCTTTAACTGATACTGCTTCATAAGAGGCTTCTACAaagtactaaataaaatattctgaaTACTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112639 lncRNA upstream 21418 26235498 ~ 26253602 (+) True G83602
TU112638 lncRNA upstream 39845 26234916 ~ 26235175 (+) True G83601
XR_002650361.1 lncRNA upstream 282008 25984681 ~ 25993012 (+) True LOC111193229
XR_002650362.1 lncRNA upstream 282008 25984681 ~ 25993012 (+) False LOC111193229
TU112538 lncRNA upstream 472568 25798460 ~ 25802452 (+) True G83522
TU112700 lncRNA downstream 5326 26310709 ~ 26310948 (+) True G83649
TU112701 lncRNA downstream 20649 26326032 ~ 26327286 (+) False LOC103031022
TU112716 lncRNA downstream 33799 26339182 ~ 26339699 (+) True G83661
TU112718 lncRNA downstream 34448 26339831 ~ 26340272 (+) True G83663
TU112730 lncRNA downstream 117131 26422514 ~ 26423061 (+) True G83672
XM_007257438.3 mRNA upstream 299737 25919557 ~ 25975283 (+) True LOC103033015
XM_022673055.1 mRNA upstream 299737 25919557 ~ 25975283 (+) False LOC103033015
XM_022673054.1 mRNA upstream 299737 25919565 ~ 25975283 (+) False LOC103033015
XM_022673056.1 mRNA upstream 303206 25919557 ~ 25971814 (+) False LOC103033015
XM_007257442.3 mRNA upstream 358176 25835147 ~ 25916844 (+) True LOC103033987
XM_007257434.2 mRNA downstream 15802 26321185 ~ 26327338 (+) True LOC103031022
XM_007257462.2 mRNA downstream 23418 26328801 ~ 26330956 (+) True LOC103041814
XM_015607885.2 mRNA downstream 26544 26331927 ~ 26335823 (+) True LOC103041516
XM_007257461.3 mRNA downstream 45748 26351131 ~ 26352435 (+) True LOC103041211
XM_007257433.3 mRNA downstream 52396 26357779 ~ 26360746 (+) True LOC103030701
TU112640 other upstream 25924 26235498 ~ 26249096 (+) False G83602
XR_002650360.1 other upstream 302777 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 1240899 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 1339470 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 1447264 24827674 ~ 24827756 (+) True trnal-cag_10
XR_002650363.1 other downstream 87507 26392890 ~ 26399267 (+) False spata7
trnay-gua_9 other downstream 202657 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 422440 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 422525 26727908 ~ 26747751 (+) False fermt2
TU113122 other downstream 1510422 27815805 ~ 27819547 (+) False fam98b

Expression Profile