RNA id: TU112700


Basic Information

Item Value
RNA id TU112700
length 240
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G83649
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26310709 ~ 26310948 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGTGTTTTCAaagtgtttgatttattttgtttgtatctTTTTGTATGTTAGAAATCAGTTATACgtttaatttcacatttttatccaatttttctccctaatttccaaagccaattacccaaacccactcattagggctccccctatcactagtgatgccccaataccaggagggtgaagactaacacatgcctcctctgatatatgtaaagtcagccactgcctctttttgaattgC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112689 lncRNA upstream 5366 26275001 ~ 26305343 (+) False c9h14orf132
TU112639 lncRNA upstream 57107 26235498 ~ 26253602 (+) True G83602
TU112638 lncRNA upstream 75534 26234916 ~ 26235175 (+) True G83601
XR_002650361.1 lncRNA upstream 317697 25984681 ~ 25993012 (+) True LOC111193229
XR_002650362.1 lncRNA upstream 317697 25984681 ~ 25993012 (+) False LOC111193229
TU112701 lncRNA downstream 15084 26326032 ~ 26327286 (+) False LOC103031022
TU112716 lncRNA downstream 28234 26339182 ~ 26339699 (+) True G83661
TU112718 lncRNA downstream 28883 26339831 ~ 26340272 (+) True G83663
TU112730 lncRNA downstream 111566 26422514 ~ 26423061 (+) True G83672
XR_002650367.1 lncRNA downstream 196391 26507339 ~ 26509319 (+) True LOC111193231
XM_015607884.2 mRNA upstream 5326 26275020 ~ 26305383 (+) True c9h14orf132
XM_007257438.3 mRNA upstream 335426 25919557 ~ 25975283 (+) True LOC103033015
XM_022673055.1 mRNA upstream 335426 25919557 ~ 25975283 (+) False LOC103033015
XM_022673054.1 mRNA upstream 335426 25919565 ~ 25975283 (+) False LOC103033015
XM_022673056.1 mRNA upstream 338895 25919557 ~ 25971814 (+) False LOC103033015
XM_007257434.2 mRNA downstream 10237 26321185 ~ 26327338 (+) True LOC103031022
XM_007257462.2 mRNA downstream 17853 26328801 ~ 26330956 (+) True LOC103041814
XM_015607885.2 mRNA downstream 20979 26331927 ~ 26335823 (+) True LOC103041516
XM_007257461.3 mRNA downstream 40183 26351131 ~ 26352435 (+) True LOC103041211
XM_007257433.3 mRNA downstream 46831 26357779 ~ 26360746 (+) True LOC103030701
TU112640 other upstream 61613 26235498 ~ 26249096 (+) False G83602
XR_002650360.1 other upstream 338466 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 1276588 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 1375159 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 1482953 24827674 ~ 24827756 (+) True trnal-cag_10
XR_002650363.1 other downstream 81942 26392890 ~ 26399267 (+) False spata7
trnay-gua_9 other downstream 197092 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 416875 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 416960 26727908 ~ 26747751 (+) False fermt2
TU113122 other downstream 1504857 27815805 ~ 27819547 (+) False fam98b

Expression Profile