RNA id: TU112701


Basic Information

Item Value
RNA id TU112701
length 1255
lncRNA type sense_over
GC content 0.36
exon number 1
gene id LOC103031022
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26321185 ~ 26327338 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gggtaaCTTGAATCTTTATTAACTTATCCCCTGAAAAATGTAGCAGGTCAAccgctcattttttattttacagacacatatatgtatttattattaccCTTGAAAAAAGTTCACAGAAAATGACCAAACCAGCACTGAGCAATCTAAGCAATTTGACAATCTAAAGGTTTTGTCTGTAATCACAAATTCTAAGTACTTAAGTTTTGGGTCTTAAGTACTAGTGAACACAATACTTAGCATTAGAAATATTATGAGAAACTCTAGACCCTAGAATgtgccttttaaatatattgctcAGTTCCTCAGCTGAGTGGATGTGTCTGTATAAGTTGTTGGATACTTGTATGTGGGGTTATACATGCTTGTAAatatcatttcattttcatgAGGCAATTTTGTTATGAACTGCCTTCAGTTTATGTAAATGAGGATAAGAATCAGTCATGCCACatatcacaaaaatatttaaatatgtcaaTAATGCCTGTTTATCAAGGTGTTAGTCTGTTACTAGGCCTAAATTTGGTGTTTTATGAATCTGGTCCAGCATGTTTTAAAATACGggaattaaaatgtatatatttataatatgatCAAAGAGATTAAGACAAtagttaaaaatagtttattaatggatTATTATTTCTCTGTAAATAATGTACAACTTTGTGTGTATGTAATATATGCAGCATGATATTTAATAAGTCAATTATATAATAGGGTTCAATTTGTTCTATGCTGAATGTGCTGTAATGATGCACAGGAAATACGCAGATGTCCCAAAGCATCAGTGTATTTTTCCTGTTACTATTCCTGGTTACCTGGGGCTACAAGGATAAGATTAAAGTGTAAATACTGTCAGATTATTTTACAGATACTGTCTTATGTAAGTGGTAAAATCAGACTGGTGTCTAAGGCCCTGTGTAAACAGGATCTAAAATGAAGTTTCCAGACAGCATTATTCACTCAGGGGCACTGAAACGATTTTCCAGAACTTTTAGGAAAGTACTGGGTGGGTCATGCTGCACAATCTGTCGCCGTCTTTCCAGTGGTGACACAAAGCCGGGTTCTTTTTACTGTGGCTTTAGAAAAACAGTCTCCTAAATCATGTGTTTTCCCTAAGCCTGCTGTCTGGCGAGACATGCTGTCAAAGCAGATGGTGGTAAGTTGCACACCCCCATGTGACCGCAAGTTCCGCACTTGGCAATAAACAGGACTTTACCGTTGTCTGTGGGTGGGTACTCAGAACCTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112700 lncRNA upstream 15084 26310709 ~ 26310948 (+) True G83649
TU112689 lncRNA upstream 20689 26275001 ~ 26305343 (+) False c9h14orf132
TU112639 lncRNA upstream 72430 26235498 ~ 26253602 (+) True G83602
TU112638 lncRNA upstream 90857 26234916 ~ 26235175 (+) True G83601
XR_002650361.1 lncRNA upstream 333020 25984681 ~ 25993012 (+) True LOC111193229
TU112716 lncRNA downstream 11896 26339182 ~ 26339699 (+) True G83661
TU112718 lncRNA downstream 12545 26339831 ~ 26340272 (+) True G83663
TU112730 lncRNA downstream 95228 26422514 ~ 26423061 (+) True G83672
XR_002650367.1 lncRNA downstream 180053 26507339 ~ 26509319 (+) True LOC111193231
XR_002650364.1 lncRNA downstream 181325 26508611 ~ 26565844 (+) False LOC111193231
XM_015607884.2 mRNA upstream 20649 26275020 ~ 26305383 (+) True c9h14orf132
XM_007257438.3 mRNA upstream 350749 25919557 ~ 25975283 (+) True LOC103033015
XM_007257462.2 mRNA downstream 1515 26328801 ~ 26330956 (+) True LOC103041814
XM_015607885.2 mRNA downstream 4641 26331927 ~ 26335823 (+) True LOC103041516
XM_007257461.3 mRNA downstream 23845 26351131 ~ 26352435 (+) True LOC103041211
XM_007257433.3 mRNA downstream 30493 26357779 ~ 26360746 (+) True LOC103030701
XM_015607915.2 mRNA downstream 65604 26392890 ~ 26399267 (+) True spata7
TU112640 other upstream 76936 26235498 ~ 26249096 (+) False G83602
XR_002650360.1 other upstream 353789 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 1291911 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 1390482 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 1498276 24827674 ~ 24827756 (+) True trnal-cag_10
XR_002650363.1 other downstream 65604 26392890 ~ 26399267 (+) False spata7
trnay-gua_9 other downstream 180754 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 400537 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 400622 26727908 ~ 26747751 (+) False fermt2
TU113122 other downstream 1488519 27815805 ~ 27819547 (+) False fam98b

Expression Profile