RNA id: TU112716


Basic Information

Item Value
RNA id TU112716
length 518
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G83661
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26339182 ~ 26339699 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cggcgctgtggaattaccgtaattaccctaataatgggcactaaaagtctgtgagactgcaaggctaaagatgaacgtttataaggttggtgctaaaaattaaagcagtgaccgttaaaacaaaattgagtatagtcagtcttagagtcttctggagaacataaataatgtatactatgtaataatattacgttatttttgtattatttttttcttttaaaaatgtggtttaagcagattacgacacactgtagtattttactatatgttgctaatatttggaagataatgatgataataaggtaattaaggttactgctactacaaatggtgtcactcaaatatgcctttaatatcaccactgatagaataattgtttgtgtagactgatttagatccatagttccccaggtggcatgtaagggttttcagtagttgatttgagcagtaattaataagtagttattataaagaagacatcattagtaagtagttatctgggagatatgtaagtctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112701 lncRNA upstream 11896 26326032 ~ 26327286 (+) False LOC103031022
TU112700 lncRNA upstream 28234 26310709 ~ 26310948 (+) True G83649
TU112689 lncRNA upstream 33839 26275001 ~ 26305343 (+) False c9h14orf132
TU112639 lncRNA upstream 85580 26235498 ~ 26253602 (+) True G83602
TU112638 lncRNA upstream 104007 26234916 ~ 26235175 (+) True G83601
TU112718 lncRNA downstream 132 26339831 ~ 26340272 (+) True G83663
TU112730 lncRNA downstream 82815 26422514 ~ 26423061 (+) True G83672
XR_002650367.1 lncRNA downstream 167640 26507339 ~ 26509319 (+) True LOC111193231
XR_002650364.1 lncRNA downstream 168912 26508611 ~ 26565844 (+) False LOC111193231
XR_002650366.1 lncRNA downstream 168912 26508611 ~ 26513522 (+) False LOC111193231
XM_015607885.2 mRNA upstream 3359 26331927 ~ 26335823 (+) True LOC103041516
XM_007257462.2 mRNA upstream 8226 26328801 ~ 26330956 (+) True LOC103041814
XM_007257434.2 mRNA upstream 11844 26321185 ~ 26327338 (+) True LOC103031022
XM_015607884.2 mRNA upstream 33799 26275020 ~ 26305383 (+) True c9h14orf132
XM_007257438.3 mRNA upstream 363899 25919557 ~ 25975283 (+) True LOC103033015
XM_007257461.3 mRNA downstream 11432 26351131 ~ 26352435 (+) True LOC103041211
XM_007257433.3 mRNA downstream 18080 26357779 ~ 26360746 (+) True LOC103030701
XM_015607915.2 mRNA downstream 53191 26392890 ~ 26399267 (+) True spata7
XM_007257430.3 mRNA downstream 53191 26392890 ~ 26399267 (+) False spata7
XM_022673068.1 mRNA downstream 53191 26392890 ~ 26399267 (+) False spata7
TU112640 other upstream 90086 26235498 ~ 26249096 (+) False G83602
XR_002650360.1 other upstream 366939 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 1305061 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 1403632 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 1511426 24827674 ~ 24827756 (+) True trnal-cag_10
XR_002650363.1 other downstream 53191 26392890 ~ 26399267 (+) False spata7
trnay-gua_9 other downstream 168341 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 388124 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 388209 26727908 ~ 26747751 (+) False fermt2
TU113122 other downstream 1476106 27815805 ~ 27819547 (+) False fam98b

Expression Profile