RNA id: TU112851


Basic Information

Item Value
RNA id TU112851
length 3339
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G83759
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26719635 ~ 26723005 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTAAGATGCACCTTttgggtcagtttcccagacagacaTTACGTTTAGTTGTAGGCGTagtcttttaattaaaaatctttgttcaaaatatgtaatgcaggactaggcttaatccctgtttggCAAACTGCATCTGTGATGTCTATGGTGCAAATAAAATTTTGCATTCCACTGGTTTCACACTAATGATGTTCAGTGTGTGGTTTAGAATTTACTTTATACCCACCCTAACCTACGATCAAAGTTTAGTTGCTGCAActggctgcttttttttttttctttgttgtttttgttttttaagccaAACCTTATCTGTTACCATCTGCCTACAGTATGTTAAGTAATGAATCACACCTGGTTCATTGTTACTTTGAAGTTCTAGAACTACTGTGTAGCTCTAATGAAATGAATTAACTCCTCATTGTTGTACATAACTTTTCTAAACCGAGCCAAATGCAGAAATGCAGAGTGGATTGAAAGGAACTGATTGATAGAATAGCTGTAAGGCAGGATcatgtgtatagtatagtacatgACTGCATTCAGAGATTTGGCAGAACGTTATCATGTCCCTTTCTCTCATGCTAAAAGTGTAATATTATTCAAGCACTATTTTGTTTACATTGAGACCCATAGTAATAAAGGAAGagagatatataatatatattttatatctatttagTTAATGACTGTGGGACTGATAGTGATAGCCCTTCATTGTTGTGATACTCCACTTGGAGGCCAAACATTTCTAATGTTCCTGCTGTGTGTAAACCTGCTGCTCATAGAGCTAGTCTTAGTTCATGTTAAGGCTTTTAGTTGTGTATTTTAAAAGCACTTTTGAGATGTTGAAGTCAGATCTGCACAGAGAAACCAATGCCTGAgtggctgtaaaaaaaaagaaatggaacTAATCTATCAGAGACGTTGTCTATCCTGTTTTGTCTGCATTGTGTCTGCACTCTCTTTGTTGTCCCAGAGAACATTGGGCCCTTCCATTCCTCGAGTTCATCATGGTTGACCATCTGTTACCCTGTTACCATGTTGCACCTATGTGGAACACTTCAAGTTAAGGGCTGCAGTTTGCATCGTATGTGATATATATTAACACAACATCCATTACAGTTACATGCCATATGTCATGGGACAGTAACTAGTATTGTGTTCAGTAATACTTTTAAGCTTctttaaagaatgctgcactccattgaatgtggatgtgactTCTGATGGTCTTTTTGTTTCTTCGCACAGATAATTCTAGCCAGAATCCTCTGGTCACGATCATTTTACCACCATCTACTAGTTCGCTGTTGGTGGTAATGCCAGTATATGCATTAAAAACATCATCACCCACTACCAGGCCTCCCTCAGACTCCATTAGCATGCTGGTGTTTTACCTCACACACAATATAACAAATCCTCACAACTCATACAGGTGTAGCCATTCCTAAGCCGTCCCCTGAGGTTACACTTAATGAACACTTTACGCTTTACTGCTATCCCATTGCATAtcattgtactgtatatttgtcaGTTATGTTTCTATGTATGTATTACTAAGCCAGTAAGCTTAGTAATGtggatattttaaaaatatcagtCAGGCCGCCTCTCAGGACCATGGGGCTGGTCCACTACCGAGAAGCTGACGTGGCTTTTCCCTCGCACTGGATGAACCAGAGCTATTTATGACtcagtgttgtttttgttggCAATAGGAGACCGAAATGAATGAAGGTCCATCCCTTGCACGTACTGTACGGCTATAAATTGCACATGACTGATGACTAAAGACCCCCTAGATATGCTTCACTGTTTTTAATACTTCAAAAATTGCATTATGTTCACatgaactgaatcatttgtattgtattttattatttttttttatttaaatgtcaagattttattttggatatatgTAATTCTTTTGGCCATATTTCTGTCTATTCCCTGCAGACCATACCTCAGAATCTTTGTATGCTTTAGTGATAACTAAATTGGCTGATTGAATCCTTTAGGAAAATAGGCAATTAATTCTTTCTAGTTTTACAATATGATCTTTTTGCgtcagtaattaaaaaaaactgagctGCATCAGCTAGATCTCCAAGACAACACAGAGCTAAGACTACCCTCAAAAACCTGATATGGGCACAGTGTTAAGAAGTTACAAGATCCGCTTTAGCATGATACATCAGCAATTGCAGATGTGAACTTTGCTCTGATGCATGCTTGGGTTTTAGGTGTTTTAAGGATGATGCATTAACTGATATGTTTGAATACTATGGTACCTAGGCTACATTTACGACTTTTTCATAATAACTCCAAATCATAAAAAAGCTTAGGATCgtatgtttcttacatttactttgacttttatttcattttagagagtgtgaacccaagatatttcatgtttgtctggactgtaaagcatttaccacttAGTAATGTTTCCTTTCCTTCTCACAACATTTTGGCATTGAGAATACCAAGCAGTGAAGTGTTTTAGgtgctttttgtctcttttatcTTGCAAAATGTCTTAATGTGTGCAATAGTACCACGTTGCTCATTATGTCCATTTCTTTCAAAAGAGATTCGGAATTCTGTCCGTCCTAGATGCCCAGAGAAGTCAATGCAGCTTTTGGTCATGATTAACACAAGACTTCTGTTTTGCACTGTGGTGTTTTAAGATGCATTTGTGAATGTAGcgccatattttattttgtactttggtttgccatcagctgttaTTCAATGACAGTTCTAGTCTAGGTGGCATCATCTGTTagttttagtatatatatattttttcaaaccTCAACACTACCCCTAAATGGCTTCCATCccattatatatacacaaatttgaacaaaaaaagaaatacctTGGGTTTATACGGTCTGCAATAACATtaaatcaaagtaaatgtaaacagGTTTTCCCATACTGTCCcaatgataatgttttttttttttatatatatatataaacccttAACCCTTCTTCTTGGGCATCGCATGTTGAAGGATCATGTTTGTTTGTCATTGGCTTATCTCTTAGGTGTAGTATTGTCAATAACATTGTGTTCTTCACACTTTTCTGTAAAATTCAGTCAAAGAGTCCAGCAGGTATCCTCCACATCTGGTTATAGATTAACCAGAAACACAGAAGGTGTCCCTTAACGactgttatttaaatgtaacttaaTGGCATTGAGCTTGAAAAGGAGAGCTGTGCAATAACCCATGCCTGTAATGGATTCAAACTGCCATCCGAATAACActgtatttatttcagtttattaaaGCATTACTTTTTTTGGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112852 lncRNA upstream 270 26718978 ~ 26719365 (+) True G83760
XR_002650364.1 lncRNA upstream 153791 26508611 ~ 26565844 (+) False LOC111193231
XR_002650366.1 lncRNA upstream 206113 26508611 ~ 26513522 (+) False LOC111193231
XR_002650365.1 lncRNA upstream 208536 26508611 ~ 26511099 (+) False LOC111193231
XR_002650367.1 lncRNA upstream 210316 26507339 ~ 26509319 (+) True LOC111193231
TU112853 lncRNA downstream 1334 26724339 ~ 26724613 (+) True G83761
XR_002650368.1 lncRNA downstream 181876 26904881 ~ 26924218 (+) True LOC111193232
TU112888 lncRNA downstream 324541 27047546 ~ 27054268 (+) True G83785
XR_002650369.1 lncRNA downstream 347700 27070705 ~ 27080372 (+) False LOC111193233
XR_002650371.1 lncRNA downstream 347700 27070705 ~ 27080372 (+) False LOC111193233
XM_007257406.3 mRNA upstream 3620 26693418 ~ 26716015 (+) True LOC103023862
XM_007257407.3 mRNA upstream 3620 26693423 ~ 26716015 (+) False LOC103023862
NM_001291252.1 mRNA upstream 105871 26604718 ~ 26613764 (+) True bmp4
XM_022673063.1 mRNA upstream 213123 26488034 ~ 26506512 (+) False snx14
XM_022672485.1 mRNA downstream 4913 26727918 ~ 26777488 (+) True fermt2
XM_022673069.1 mRNA downstream 72803 26795808 ~ 26897068 (+) True stxbp6
XM_007257394.3 mRNA downstream 705747 27428752 ~ 27506291 (+) True c9h15orf41
XM_022673078.1 mRNA downstream 706236 27429241 ~ 27474184 (+) False c9h15orf41
XM_015607875.2 mRNA downstream 706243 27429248 ~ 27506291 (+) False c9h15orf41
trnay-gua_9 other upstream 211510 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 320368 26392890 ~ 26399267 (+) False spata7
TU112640 other upstream 470539 26235498 ~ 26249096 (+) False G83602
XR_002650360.1 other upstream 747392 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 1685514 25030037 ~ 25034121 (+) False c9h8orf74
TU112857 other downstream 4818 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 4903 26727908 ~ 26747751 (+) False fermt2
TU113122 other downstream 1092800 27815805 ~ 27819547 (+) False fam98b
TU113547 other downstream 2247259 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 2247274 28970279 ~ 28970839 (+) False LOC107197841

Expression Profile