RNA id: XM_022672485.1


Basic Information

Item Value
RNA id XM_022672485.1
length 4792
RNA type mRNA
GC content 0.43
exon number 16
gene id fermt2
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26727823 ~ 26777488 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagagaggagagagagagcgcccgggtgagagagtgagtgagtgagagagagagggagacggCCACTGGACaccattagctagctagctaaagcccTGAGGAGGTCCAGCTAGTTTTGAGGGACTTTATTTGGACCAGTCCTTTTGGAAATCTCCTCAATGAGTTAAAACACGTTTCAGCTCAAACAAAAGGaagaaataaaggaaagaaACGAAGAGGTGTTGAGTTTTCGCAGCGTTTGGAGCTGAAGTGGCACTTGTGGATTTGGTTTAGCGTGTGCTGGTGAAGGATGGCGCTGGACGGTATACGGATGCCCGATGGCTGCTATGCCGATGGGACTTGGGAACTGAAGATGCATGTGACTGACCTCAATAAGGATGTGTCTTTGAGAGTCACTGGAGAAATTCATATTGGCGGAGTAATGCTGAAGCTTGTTGAGAAACTTGaTGTTAAAAAGGATTGGTCAGATCATGCGTTGTGGTGGGAGAAGAAGAAGACTTGGCTGCTAAAGACTCACTGGACTCTGGATAAGTACGGGATTCAGGCCGATGCCAGATTGCTCTTTACGCCTCAGCACAAGCTCTTGCGCCTGCAGCTGCCCAATATGAAACACATGAAGGTCAAAGTGAACTTCTCAGACCGCGTCTTCAAGGCAGTGTCCGATATCTGCAAAACCTTCAGTAAGTCTTTTTTCCTGTTATACAGAGGAATAAATTGTGTTtcatggtgtgttttttttgttttactcatGATTATTGTAAATCTGATTGGCTACCTGcattgtctgtctgtgtgtccaCACTCCTGTGCAGGAGGTTTTATCAAGCTGATAGCTCTTGTcctctctttttgtttcttttcctctgcttttcctcctctttcttcCCCAGCTTCTGAGGTAATTTACATCGGACCTGTGAAAGGGAGCATCTACTCCAGTCCTGGCCTCtacagcaagacaatgactccCACATATGACTCTCGAGACGGCAGCCCCCTTTCCCCTACTTCAGCCTGGTTTGGAGACAGTCCGTTATCTGAGGGCAATCCCAGTATCCTGGCTGTTAGTCAGCCCATTTCTTCACCCGACATATTGGTCAAACTCTACAAACCACCCTCTCTCCTGGATAAGGCCAAGATCAATCAGGGGTGGCTGGACTCCTCCAGGTCTCTGATGGAACAAGACGTGAAGGAGAATGAAGTTCTTCTTTTGCGGTTCAAGTACCACAGCTTTTTTGACCTTAACCCAAAGTACGATGCCATCCGGGTGAACCAGCTGTATGAGCAGGCCAAATGGGCCATCCTGCTGGAGGAAATCGAGTGTACCGAGGAAGAGATGATGATGTTTGCTGCCCTTCAGtatcaCATCAACAAGCTGTCCATCATGTCTTCGGACAATCACATGAATAACAGTGAGAAGGAGGTGGATGAGGTGGATGCAGCGCTGTCTGATTTGGAGATCACCCTGGAGGGAGGAAAAACCTCCAATGCTCTGGGTGATATTACATCCATTCCTGAGCTGGCAGATTATGTTAAAGTCTTCAAGCCAAAAAAACTGACACTGAAAGGACCCAAGCAGTACTGGTGCACATTTAAAGACATCACAATTTCGTGCTACAAGAGCCGTGAGGAGGCTCATGGCATACCCGCCCACCAAATGAACCTGAGAGgctGTGAAGTGACTCCAGATGTTAATATTTCTGGTCAGAAATTCAACATCAAGTTGCTAATCCCAGTGGCGGATGGCATGAATGAGATCTGGCTGCGATGTGACACTGAGAGGCAGTATGCCCAGTGGATGGCTGCCTGTCGCCTGGCCTCCAAAGGAAAGACAATGGCAGACAGCTCCTACAATCTGGAGGTCCAGAACATTCTCTCCTTCCTTAAGATGCAGCATATGAATCCAGACCCGCAGATCATTGAGCCAATCACCACCGATATTAACCCAGAGTGTCTGGTGTCCCCACGGTACCTAAAgaagtacaaaaataaacagCCAGGCTATATCAGGGACCTGATCTCTGCTCGTATCCTGGAGGCCCATCAGAATGTGGCCCAGATGAGTCTGATTGAGGCCAAGATGCGCTTCATCCAGGCCTGGCAGTCACTGCCAGAGTTTGGGATCACTCATTTTCTGGCTAAATTCCAAGGCAGTAAGAGAGAAGAGCTGATTGGCATCACTTACAACAGACTGATCCGCATAGATGCCAGCACCAGAGATGCCATCAAGACTTGgcggttcagcaacatgaaacAGTGGAATGTCAACTGGGAGATCAAGATggTTACAGTGGAGTTTGCAGATGAGCCGAGTCTGTCGTTTATCTGTGCGGAGGTGGACTGCAAGGTGGTGCATGAGTTCATTGGTGGCTACATTTTCCTGTCCACACGTGCCAAGGACCAGAATGAGTCTCTAGATGAGGAGATGTTCTACAAGCTCACAAGTGGCTGGGTCTGATAGCTGCTCCCCGCCCAACAGAAGGGGATGGGGTGGTGTGGGGGACAGGGAtggctgttttgtttgttttttttgtattgtttttaaccATGCCAACAGTCTGACATGGCCACACAGTAATTGTTTGAAGGCTgacaacacatttttaattttattattattatttttttatttcttgcatTAACGCTGACAAACATGATAATAACACTAATGAAGTGACTCTGAGGACGAGGAGAGTGTTCTCACTCCGCCCAAGGCTTCACCTCTTGCTGAGGCATATCTGATAAATGCTTCCTGAAGTGAGCAGCTACTTTCACAGAGACTCCTGCCTGCTGGCATTCACAGGGCTTGGTGTGTGtacatttgtgtgtttgtgtgtttgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgttgtcacTACAGCATTGGACACCTGCCACTTCCTTCCTGCCACCTGCTACTGCAATGCCTGTGAATCCTAAAGGATCTAGAGTGACATCCATGACCCTTTCACCTCTTTCAGGCcttaacaacaacagcaacaaaagAAAATTCAATTATCTTAAAAGGGTTTTGGCACTCAGTGGTGTTGTGTAATGTTTCACGTGTATTGTTGGGGAATTGAGAGTTTTGGTTCTCTTGGTGCTCATTTGTGTTTAATCTTCTTTAGTCCCTACGCCGCTTCACTGTGATTCAGCACACCGTCaggttttatttgcatttattttaccTTAACAATTGATACGACAGACAtcaaaatacagttttacacTCATTGTACACAGCCTCTGTGGCAGTAGCAATCTTTTTAcgtttttaatttgaatttagGGATTCTTATCATGAAGAAGCTCTGTGAGGTAGTCTTGAAGGATTATTGCTGACTAAATAATTGCGCAAAACACTAAAATTAGTCTTGCAACAcagctttatttttgtttttattttaatatgatctgttaacattaaaatatgcaAGCACTTCTACAGTGAAGGAAAAGACCCTACATGTATAAGCTGTCTTTTGTTGTctagctttattttattatattttattttatgttcgtCTAATATCCTGCAGCAGGACCCTTAGAGGTTGCTTTATAGTTATGCGATCAGCACTACAACTGCTAGTGGACAGCCTTTGGATTTTTGCCGTTATAAAGAATATTGTTGCAAAAAACACGTTTGCAATGGCGCTCATACACAATATGAAGAATGCAATGATGAAGGAATATGCCATTTGAGTTATTTACTAGAAAACGTGTTGAAGGAAATAATGGTAATCAGAAATAGGGCTGAGGTCCAGTATGCAAGGATGATCTCAGCTGTGTTTTGGCTCCACACATTTGTTTCCTATTTTCCTGCGCAGCCTGCTTTTCTGTCTTTCCCACTTTAATCCTAAACCATATAGTATTACTCCAAACCATTATATTGTTATGCACCAGCAATAGGTCACTGTGTTTTAAAGAtaatacagctttttttttctgaatatgaaGGAATGCGTAATGAAGTATTAGTTTTTGTAACTaatgtaaaaacacagttttatagAATTGTACAGTTGTCATTTGTGTTGCTgctttttttctgtcattttttggAAGTGCATTTTTCcagaagagaaggaaaaaagccATTGTTTAGCATTGTGTGGTATGTGTGCCTGCCAATGTAAAGGTCTTACTGAGTTTTTAAGAGTAaagaatatatctatataaatataaatatatataatgtgatgAAGTATGTCTCAAGCTCCAGGTCTGAAGAATATGATTTTATATAATTCTATCTAGCTGCTGCACATTTGATCACTTCCACATTGAAGGGCTTTTCCATGAcatttttacagctttaaataaaataccgtCTGGAAATGTTCATTTCTGCCTGCTGCGTTAAAGTGTTGAAGTACTGGGCAcacgttttttaaatgttttatttctcttagCACATAAATGAAGAATCTTGTATTAGCTGACTTGTTTTCTCTTATAGTGAAGTCATTTCATCAGTATCAGTTTTTATGTAGACCCACATTAACGGTAATTTAAGAGCCAAGTGTTTAGTTATGAAGGAACGCCTTCTCACCCTGGAGTTTGAGACAAATTGCCATAAAATGAACTAGATGAACAGCTAGCTTAGCGTATGTTTTCCTcctacattgttttatttttgtttgcctCAGATGTTCAGAACGGCAGTGCATGGCCTGCTGTTTTTAGactgtaaaaatgcatttattttaaaaataaaaatgatttttatttaaaa

Function

GO:

id name namespace
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0001525 angiogenesis biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007155 cell adhesion biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0031258 lamellipodium membrane cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005634 nucleus cellular_component
GO:0005938 cell cortex cellular_component
GO:0031674 I band cellular_component
GO:0009986 cell surface cellular_component
GO:0014704 intercalated disc cellular_component
GO:0008289 lipid binding molecular_function

KEGG:

id description
K17083 FERMT2, KIND2; kindlin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112853 lncRNA upstream 3305 26724339 ~ 26724613 (+) True G83761
TU112851 lncRNA upstream 4913 26719635 ~ 26723005 (+) True G83759
TU112852 lncRNA upstream 8553 26718978 ~ 26719365 (+) True G83760
XR_002650364.1 lncRNA upstream 162074 26508611 ~ 26565844 (+) False LOC111193231
XR_002650366.1 lncRNA upstream 214396 26508611 ~ 26513522 (+) False LOC111193231
XR_002650368.1 lncRNA downstream 127393 26904881 ~ 26924218 (+) True LOC111193232
TU112888 lncRNA downstream 270058 27047546 ~ 27054268 (+) True G83785
XR_002650369.1 lncRNA downstream 293217 27070705 ~ 27080372 (+) False LOC111193233
XR_002650371.1 lncRNA downstream 293217 27070705 ~ 27080372 (+) False LOC111193233
XR_002650370.1 lncRNA downstream 293227 27070715 ~ 27080240 (+) False LOC111193233
XM_007257406.3 mRNA upstream 11903 26693418 ~ 26716015 (+) True LOC103023862
XM_007257407.3 mRNA upstream 11903 26693423 ~ 26716015 (+) False LOC103023862
NM_001291252.1 mRNA upstream 114154 26604718 ~ 26613764 (+) True bmp4
XM_022673062.1 mRNA upstream 221406 26488033 ~ 26506512 (+) True snx14
XM_022673069.1 mRNA downstream 18320 26795808 ~ 26897068 (+) True stxbp6
XM_007257394.3 mRNA downstream 651264 27428752 ~ 27506291 (+) True c9h15orf41
XM_022673078.1 mRNA downstream 651753 27429241 ~ 27474184 (+) False c9h15orf41
XM_015607875.2 mRNA downstream 651760 27429248 ~ 27506291 (+) False c9h15orf41
XM_022673079.1 mRNA downstream 654070 27431558 ~ 27506291 (+) False c9h15orf41
trnay-gua_9 other upstream 219793 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 328651 26392890 ~ 26399267 (+) False spata7
TU112640 other upstream 478822 26235498 ~ 26249096 (+) False G83602
XR_002650360.1 other upstream 755675 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 1693797 25030037 ~ 25034121 (+) False c9h8orf74
TU113122 other downstream 1038317 27815805 ~ 27819547 (+) False fam98b
TU113547 other downstream 2192776 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 2192791 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 2222014 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 2226606 29004094 ~ 29025114 (+) False LOC103045392

Expression Profile