Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU112899 |
| length | 715 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 5 |
| gene id | LOC111193233 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_035905.1 |
| NCBI id | CM008308.1 |
| chromosome length | 42966623 |
| location | 27070705 ~ 27082187 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU112888 | lncRNA | upstream | 16582 | 27047546 ~ 27054268 (+) | True | G83785 |
| XR_002650368.1 | lncRNA | upstream | 146632 | 26904881 ~ 26924218 (+) | True | LOC111193232 |
| TU112853 | lncRNA | upstream | 346237 | 26724339 ~ 26724613 (+) | True | G83761 |
| TU112851 | lncRNA | upstream | 347845 | 26719635 ~ 26723005 (+) | True | G83759 |
| TU112852 | lncRNA | upstream | 351485 | 26718978 ~ 26719365 (+) | True | G83760 |
| TU112907 | lncRNA | downstream | 6827 | 27087200 ~ 27100573 (+) | True | G83795 |
| TU112919 | lncRNA | downstream | 53602 | 27133975 ~ 27140397 (+) | True | G83805 |
| TU112939 | lncRNA | downstream | 163383 | 27243756 ~ 27244268 (+) | True | G83824 |
| TU112941 | lncRNA | downstream | 188585 | 27268958 ~ 27269231 (+) | True | G83826 |
| TU113070 | lncRNA | downstream | 523864 | 27604237 ~ 27612455 (+) | False | LOC107197843 |
| XM_022673069.1 | mRNA | upstream | 173782 | 26795808 ~ 26897068 (+) | True | stxbp6 |
| XM_022672485.1 | mRNA | upstream | 293362 | 26727918 ~ 26777488 (+) | True | fermt2 |
| XM_007257406.3 | mRNA | upstream | 354835 | 26693418 ~ 26716015 (+) | True | LOC103023862 |
| XM_007257407.3 | mRNA | upstream | 354835 | 26693423 ~ 26716015 (+) | False | LOC103023862 |
| NM_001291252.1 | mRNA | upstream | 457086 | 26604718 ~ 26613764 (+) | True | bmp4 |
| XM_007257394.3 | mRNA | downstream | 348379 | 27428752 ~ 27506291 (+) | True | c9h15orf41 |
| XM_022673078.1 | mRNA | downstream | 348868 | 27429241 ~ 27474184 (+) | False | c9h15orf41 |
| XM_015607875.2 | mRNA | downstream | 348875 | 27429248 ~ 27506291 (+) | False | c9h15orf41 |
| XM_022673079.1 | mRNA | downstream | 351185 | 27431558 ~ 27506291 (+) | False | c9h15orf41 |
| XM_007257384.3 | mRNA | downstream | 690420 | 27770793 ~ 27813908 (+) | True | spred1 |
| TU112857 | other | upstream | 323099 | 26727823 ~ 26747751 (+) | False | fermt2 |
| TU112859 | other | upstream | 323099 | 26727908 ~ 26747751 (+) | False | fermt2 |
| trnay-gua_9 | other | upstream | 562725 | 26508040 ~ 26508125 (+) | True | trnay-gua_9 |
| XR_002650363.1 | other | upstream | 671583 | 26392890 ~ 26399267 (+) | False | spata7 |
| TU112640 | other | upstream | 821754 | 26235498 ~ 26249096 (+) | False | G83602 |
| TU113122 | other | downstream | 735432 | 27815805 ~ 27819547 (+) | False | fam98b |
| TU113547 | other | downstream | 1889891 | 28970264 ~ 28970827 (+) | True | LOC107197841 |
| LOC107197841 | other | downstream | 1889906 | 28970279 ~ 28970839 (+) | False | LOC107197841 |
| LOC103045392 | other | downstream | 1919129 | 28999502 ~ 29000106 (+) | False | LOC103045392 |
| TU113562 | other | downstream | 1923721 | 29004094 ~ 29025114 (+) | False | LOC103045392 |
