RNA id: XR_002650370.1


Basic Information

Item Value
RNA id XR_002650370.1
length 714
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id LOC111193233
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27070705 ~ 27082187 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCCTGGGTAATACATGTCGATACATTTGACACGTTTGGAAACTGTTAATTTTGGACTCCCTTCTAGTGGGTACTCTCCTCTGTAGAGAGTCTCTGGCATCGCTAGTTCTCGCGTAGTTTAGTTCTGGCGTGTTTTAgagagcagccaggtgagtcAGAGATTGCCCCCCAGGGTAAAAATCGTGTAATTTATAATCCTGTGCCGCTTATGTAGTGTGAAATTCAcaacaactgaaggactcgCGAGTAACAGCACAACCAGTCGACTTCATGAGAGGTGTAGTGAGAGGCAGGCAGTAGAGGTAATTTATACAGTCTGTGGTTCAAACGGACGTTTCTAACTGACGGCTATTGAAAAACCACTGGCAATATGGCGGCaccaagcgaccaaagaaacacacaaatgtTAACAAGATCCCCaggactctttctctctccctgacGGTGAATTTATCCAACAAGCAGAAGCTTCTATGGGTCTCCCGTTTACTCCTCTGACCCTCAATACTGCAGGATTAAAAAgctctttttttctccttttacaAAGAATGGGCTCATCCAAGCAAGGAAACCTTGGGAGTTTTCTACTTGTACTCTTTTGGGACTAAGTATGCTACATAGAAACAGCAGCCGGAGTGTTCTCCTCACCCTCTTCCTCCATGTTCACATCAGGTTTCTCCTCTGCAATTACCTGCCGAGGAGGTGGAAGAAGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112888 lncRNA upstream 16447 27047546 ~ 27054268 (+) True G83785
XR_002650368.1 lncRNA upstream 146497 26904881 ~ 26924218 (+) True LOC111193232
TU112853 lncRNA upstream 346102 26724339 ~ 26724613 (+) True G83761
TU112851 lncRNA upstream 347710 26719635 ~ 26723005 (+) True G83759
TU112852 lncRNA upstream 351350 26718978 ~ 26719365 (+) True G83760
TU112907 lncRNA downstream 6960 27087200 ~ 27100573 (+) True G83795
TU112919 lncRNA downstream 53735 27133975 ~ 27140397 (+) True G83805
TU112939 lncRNA downstream 163516 27243756 ~ 27244268 (+) True G83824
TU112941 lncRNA downstream 188718 27268958 ~ 27269231 (+) True G83826
TU113070 lncRNA downstream 523997 27604237 ~ 27612455 (+) False LOC107197843
XM_022673069.1 mRNA upstream 173647 26795808 ~ 26897068 (+) True stxbp6
XM_022672485.1 mRNA upstream 293227 26727918 ~ 26777488 (+) True fermt2
XM_007257406.3 mRNA upstream 354700 26693418 ~ 26716015 (+) True LOC103023862
XM_007257407.3 mRNA upstream 354700 26693423 ~ 26716015 (+) False LOC103023862
NM_001291252.1 mRNA upstream 456951 26604718 ~ 26613764 (+) True bmp4
XM_007257394.3 mRNA downstream 348512 27428752 ~ 27506291 (+) True c9h15orf41
XM_022673078.1 mRNA downstream 349001 27429241 ~ 27474184 (+) False c9h15orf41
XM_015607875.2 mRNA downstream 349008 27429248 ~ 27506291 (+) False c9h15orf41
XM_022673079.1 mRNA downstream 351318 27431558 ~ 27506291 (+) False c9h15orf41
XM_007257384.3 mRNA downstream 690553 27770793 ~ 27813908 (+) True spred1
TU112857 other upstream 322964 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 322964 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 562590 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 671448 26392890 ~ 26399267 (+) False spata7
TU112640 other upstream 821619 26235498 ~ 26249096 (+) False G83602
TU113122 other downstream 735565 27815805 ~ 27819547 (+) False fam98b
TU113547 other downstream 1890024 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 1890039 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 1919262 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 1923854 29004094 ~ 29025114 (+) False LOC103045392

Expression Profile