RNA id: TU112941


Basic Information

Item Value
RNA id TU112941
length 274
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G83826
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27268958 ~ 27269231 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgcaaaacaacaagactcagaaacagcttcattccggaagctgtaagactcttaaactccacttaacaaacacactgcactgacaccaaggacaaattactgtttactgtttacaaacatggtcactttacttgcactgagacactttatctccactgctctaattcacattatcgtgctgctatagcacacttgcactctggacttcatgttgctgaacctttctactctctatttattttttttattctttgggatatttatctatctattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112939 lncRNA upstream 24690 27243756 ~ 27244268 (+) True G83824
TU112919 lncRNA upstream 128561 27133975 ~ 27140397 (+) True G83805
TU112907 lncRNA upstream 168385 27087200 ~ 27100573 (+) True G83795
TU112893 lncRNA upstream 186771 27079360 ~ 27082187 (+) True LOC111193233
TU112899 lncRNA upstream 188585 27070850 ~ 27080373 (+) False LOC111193233
TU113070 lncRNA downstream 335006 27604237 ~ 27612455 (+) False LOC107197843
XR_002650373.1 lncRNA downstream 340011 27609242 ~ 27615567 (+) False LOC107197843
XR_001518812.2 lncRNA downstream 342312 27611543 ~ 27615567 (+) True LOC107197843
TU113068 lncRNA downstream 343325 27612556 ~ 27615550 (+) False LOC107197843
TU113109 lncRNA downstream 435023 27704254 ~ 27704881 (+) True G83972
XM_022673069.1 mRNA upstream 371890 26795808 ~ 26897068 (+) True stxbp6
XM_022672485.1 mRNA upstream 491470 26727918 ~ 26777488 (+) True fermt2
XM_007257406.3 mRNA upstream 552943 26693418 ~ 26716015 (+) True LOC103023862
XM_007257407.3 mRNA upstream 552943 26693423 ~ 26716015 (+) False LOC103023862
NM_001291252.1 mRNA upstream 655194 26604718 ~ 26613764 (+) True bmp4
XM_007257394.3 mRNA downstream 159521 27428752 ~ 27506291 (+) True c9h15orf41
XM_022673078.1 mRNA downstream 160010 27429241 ~ 27474184 (+) False c9h15orf41
XM_015607875.2 mRNA downstream 160017 27429248 ~ 27506291 (+) False c9h15orf41
XM_022673079.1 mRNA downstream 162327 27431558 ~ 27506291 (+) False c9h15orf41
XM_007257384.3 mRNA downstream 501562 27770793 ~ 27813908 (+) True spred1
TU112857 other upstream 521207 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 521207 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 760833 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 869691 26392890 ~ 26399267 (+) False spata7
TU112640 other upstream 1019862 26235498 ~ 26249096 (+) False G83602
TU113122 other downstream 546574 27815805 ~ 27819547 (+) False fam98b
TU113547 other downstream 1701033 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 1701048 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 1730271 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 1734863 29004094 ~ 29025114 (+) False LOC103045392

Expression Profile