RNA id: TU113070


Basic Information

Item Value
RNA id TU113070
length 928
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id LOC107197843
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27604237 ~ 27615567 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attattattattattattattaataataataataataatattaatactttttactgaacttttaaataacatttttacatttgtatatTGTCCAACACCGGAGTTAtttcaaacaaacaacaacaactgaAAAACATATCTTTATCtaattgatttaaataaattacatccaGCGAatctttttaattaatgtttataacaataaggaaaaaaaatccttgTAAATCTAAACAGcgaaaactgtgttttttaactCTGTAGACGAGATTAAGTCTATCATTTTTTCTCCTGTTTGCTGTCAGAGCTATTTCTTGTTTACTTCAGTGTGGAAACAGCGgacttaaatgtaaaattatttgtaGCGGTTTAAGTGTATATCACATTCTAGAAGAGGGCGGCCGTGTCCCCTCAGCTCGGCTGTGCCCCGGGGTGgcttcagcagcagcattagtctGTTTTAATTCCGCTCATACTGGCCCGTTTCTCCTCCAGAGCGAAGCAGATAATGATGGTGAATAGGAGAAGAGTGCAGCAGTGAAGTGGCCCCGGCGCTCTGTTCCGCGCTCTCTGAGCCATTACAACACGACTCCCGTAATCTCCGTTAACTCTAATCACCTCTAATGTAAAAGGCGCTCAGCTACAATGAACCATCAGGTAACGAGGGACTCTTTCTTATTCCTTACTGTTGTGTactttatataaaactataataatttaTGAACAAATCATTAAATTGcttgtttttaaaaactataaaataccaGTAGggaattatatatacatattatttaattatacagtaattttaaaagtaaacaagtcagtaaatacaaaattattggataaggttatatatatatatatatatatatatatatatatatatattatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112941 lncRNA upstream 335006 27268958 ~ 27269231 (+) True G83826
TU112939 lncRNA upstream 359969 27243756 ~ 27244268 (+) True G83824
TU112919 lncRNA upstream 463840 27133975 ~ 27140397 (+) True G83805
TU112907 lncRNA upstream 503664 27087200 ~ 27100573 (+) True G83795
TU112893 lncRNA upstream 522050 27079360 ~ 27082187 (+) True LOC111193233
TU113068 lncRNA downstream 101 27612556 ~ 27615550 (+) False LOC107197843
TU113109 lncRNA downstream 91799 27704254 ~ 27704881 (+) True G83972
TU113127 lncRNA downstream 208415 27820870 ~ 27822211 (+) False fam98b
TU113131 lncRNA downstream 216994 27829449 ~ 27831584 (+) True LOC103044189
TU113132 lncRNA downstream 219522 27831977 ~ 27832246 (+) False LOC111193235
XM_007257394.3 mRNA upstream 97946 27428752 ~ 27506291 (+) True c9h15orf41
XM_015607875.2 mRNA upstream 97946 27429248 ~ 27506291 (+) False c9h15orf41
XM_022673079.1 mRNA upstream 97946 27431558 ~ 27506291 (+) False c9h15orf41
XM_022673078.1 mRNA upstream 130053 27429241 ~ 27474184 (+) False c9h15orf41
XM_022673069.1 mRNA upstream 707169 26795808 ~ 26897068 (+) True stxbp6
XM_007257384.3 mRNA downstream 158338 27770793 ~ 27813908 (+) True spred1
XM_022673084.1 mRNA downstream 203377 27815832 ~ 27820689 (+) True fam98b
XM_007257383.3 mRNA downstream 211801 27824256 ~ 27829462 (+) False LOC103044189
XM_022673086.1 mRNA downstream 236222 27848677 ~ 27855382 (+) True LOC103043868
XM_007257377.2 mRNA downstream 243286 27855741 ~ 27858741 (+) True LOC103042318
TU112857 other upstream 856486 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 856486 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 1096112 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 1204970 26392890 ~ 26399267 (+) False spata7
TU112640 other upstream 1355141 26235498 ~ 26249096 (+) False G83602
TU113122 other downstream 203350 27815805 ~ 27819547 (+) False fam98b
TU113547 other downstream 1357809 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 1357824 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 1387047 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 1391639 29004094 ~ 29025114 (+) False LOC103045392

Expression Profile