RNA id: XR_002650373.1


Basic Information

Item Value
RNA id XR_002650373.1
length 2711
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC107197843
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27604237 ~ 27615567 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAATCTCTCCGTatgaattaaaacacacacgcacactcacacacacacacattcagataaGCTCGTGACGTTTCCAGGAGGATTGTGAGCGAAGCAGATAATGATGGTGAATAGGAGAAGAGTGCAGCAGTGAAGTGGCCCCGGCGCTCTGTTCCGCGCTCTCTGAGCCATTACAACACGACTCCCGTAATCTCCGTTAACTCTAATCACCTCTAATGTAAAAGGCGCTCAGCTACAATGAACCATCAGGTCCAGAATAAGTGCATTTACAAACGAAGTGATGCCTCCCACTACTTTTCCTGACCtcttcatttattaaataaatatcactTAGTGCATAATTACAGCTACAATTTTGAGGAGCATCTGAAGAGCATCTCAGGAGCATGTGACTGCTTATTTCATACAGCCCAAATTAAAGGTTTGAATCCCACTTGCTTgtttgaaatgtatttaaacaaaTGCTGTTGCCATGTTTGTTCGTGTTttgttttccatgtttttttcctgtCTAAGTGTTTCCCCCTTGGTTCTGGAAGAGTTCACACGATCAAGCAAGGCACCCAGGTAATTACCGCGCATTGTCAAATAAAGGGACTGCTGATTCAAATGAGGAGTGAAATATCAAAGAAAAGTGTTCCCTTTGCAGCCAGCCACTTATCCACACAGGAGACAGCAGTGAGACGACTGCCACAGGGACACTCACAGAGGCTCTGACAACAGACAGCCTTAGATTCCTTGGTAAATATTAGACCCCACAATATTTTGCACACAAGCAGACGACGTGTGAAGCTTTGCACTGTACACCTCCCTGGCCATGCACGGTGCTAAAAAGAGAATGCCTCATTTCTGAAAAAACTCAGACCTTCTCTGCACTCAGACAAGCTCATAATTTAGTCTCGGCTGTATGGTGAGATACTCCATAGGTATTGTGCGCAACATAGGGCCTTAAAGAGAATAAAGCCCAAGTGAAATAATTTAAACTGGCATATGGTTGTTTACTGGTAATTTGTTTGTACAGAATACTGCTTGGGTTTAAACTCTAGAAATATGTTCACCTTTACCACCTGAAATGCAAGTTTGGGATATGAAGACATAAGGTATAACTTGTGGATAAGCACtttatttaaactgatataatggtttttttattattattatttgtgtctCTCATctcctcaaaaaaaaatatcccatGTTTAGCAAAGGTGGTCTCTATGGAAATGCTTAGATTTCTTCTTTTCTGAGATTTGGGACTTGCCTCTTTGGAGAAAAGAGGGTCTTACTGGAGATGCATCAGCAGTCATTTGTCCAACAAGTACAAGTTGCAAATGTTCACATCGAGATGCAGCCTTCGTCTAGCTGTAATTTTCTTGGTTTGATCTCACTGACGCTGGGAAATGTACGATTATgacacaataaaagaaatacttgCAATGCCGTGGTTGGTGTGTGAAATGGTTGGAGGCGAAATTCAGACTGCAAGAATGTGTGAGAGTTTAACATTATAAACACACTTCCCTCCCTCTAGCTTACAGACAGCTCCGAGGGATACTTTACATGTAAATATTCACTCAGCAAAAGGCCAGATCATTAATTATTGAGAGCCACAAAAAGTGTAATACTTCAATGTTTAACATGTGCGTCTTATAACTCATTAGATGAGGTTGAGGATGAGCTGTGAGAAGGGGAAAGTATTCCTTTCAAACAGTCTGAGAATTAGCTTGAGAAAAACAAAATGGAGGAGCTTCAGTTTAATAGCACTGCTTTTCCAGTTTAGGAGAAACAAATGAAGATatgttaagataaaaaaaaatattcacactaATAAAGCttcattaatattttagtttagtcTCAGGCTTTGGTCTGGACtatttttatgataaaataaaaaataatcactgCTTAGGGTCTTTCCACTTATTCCTCCAAGTGTTTCACATAATAAGTATTATAAACATTTgagtttaataataatgacaGTAGTCTGTTTTAATCAGAACTGttgtaataaagtatttttgtgaaaaaaagactCTCAGTGTtgattaataatttatatatgcTAAACCTGGCCATACCTTTTATGGATGAAAAAAGGCAAGGTCCTAATTTAATGAGGAGATAAAGGTAATATATGGTAGTACTTGAATaaaacatcattttatttttttaaagagtggaaGATACAAAATGTGGCCATAATACTTGATAAAGTTTCATACTTGGGGATAGTTTGTTGTCCAACTTTCCCAGTGAATGGAGTCAGGCTGCATTCTGGCACCCATCATCTTTGTTACACTATGGCCTGTGGCTGAGCTCTTGACAGATTGTCACAAGGTGATAGAACTCAAGTGGAGACACTAGAAGGGTGGCACTTAGAGCACAAGAAGATTGACTTCTGGGTACACCATGCAGGATCAACCCTTTAAAGAGTACCATCCCACTGGCGTGAGTGGAATGTGGCAGAAATGAACACTTGTAGAAACAACACTAACATGCAAGAAGAACTGTAACTGAAGGATCAAATGTGTCCCTGAAAATGTAGATTTGCTTTTCATCACACAGGTAAAGGTATGAATGAAAAAGGTTTGGTTCGGGTACACTGCAAGACAAGTAGGGTTCTATATAAACCCTTGTTGTTGAACCTTTTTGTAATCTGCAAAAAGGCTTTTCACCcaattaaagaacattttaattaagCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112941 lncRNA upstream 340011 27268958 ~ 27269231 (+) True G83826
TU112939 lncRNA upstream 364974 27243756 ~ 27244268 (+) True G83824
TU112919 lncRNA upstream 468845 27133975 ~ 27140397 (+) True G83805
TU112907 lncRNA upstream 508669 27087200 ~ 27100573 (+) True G83795
TU112893 lncRNA upstream 527055 27079360 ~ 27082187 (+) True LOC111193233
TU113109 lncRNA downstream 88687 27704254 ~ 27704881 (+) True G83972
TU113127 lncRNA downstream 205303 27820870 ~ 27822211 (+) False fam98b
TU113131 lncRNA downstream 213882 27829449 ~ 27831584 (+) True LOC103044189
TU113132 lncRNA downstream 216410 27831977 ~ 27832246 (+) False LOC111193235
XR_002650374.1 lncRNA downstream 216483 27832050 ~ 27845966 (+) True LOC111193235
XM_007257394.3 mRNA upstream 102951 27428752 ~ 27506291 (+) True c9h15orf41
XM_015607875.2 mRNA upstream 102951 27429248 ~ 27506291 (+) False c9h15orf41
XM_022673079.1 mRNA upstream 102951 27431558 ~ 27506291 (+) False c9h15orf41
XM_022673078.1 mRNA upstream 135058 27429241 ~ 27474184 (+) False c9h15orf41
XM_022673069.1 mRNA upstream 712174 26795808 ~ 26897068 (+) True stxbp6
XM_007257384.3 mRNA downstream 155226 27770793 ~ 27813908 (+) True spred1
XM_022673084.1 mRNA downstream 200265 27815832 ~ 27820689 (+) True fam98b
XM_007257383.3 mRNA downstream 208689 27824256 ~ 27829462 (+) False LOC103044189
XM_022673086.1 mRNA downstream 233110 27848677 ~ 27855382 (+) True LOC103043868
XM_007257377.2 mRNA downstream 240174 27855741 ~ 27858741 (+) True LOC103042318
TU112857 other upstream 861491 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 861491 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 1101117 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 1209975 26392890 ~ 26399267 (+) False spata7
TU112640 other upstream 1360146 26235498 ~ 26249096 (+) False G83602
TU113122 other downstream 200238 27815805 ~ 27819547 (+) False fam98b
TU113547 other downstream 1354697 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 1354712 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 1383935 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 1388527 29004094 ~ 29025114 (+) False LOC103045392

Expression Profile