RNA id: TU113110


Basic Information

Item Value
RNA id TU113110
length 663
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G83973
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27704226 ~ 27704888 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggcagggtgcctccatgtctatgttaccttctggctctctgcctttagttaggctgttttattcagttctgccggagtcatttgccacactctgataatgttttaatattctcagttttgcataaatccagtaaaaactaattccatctctctgctttcctccgagttactgactgcccacctgtctgacccgataccgatgttggaccctcaggctctcgcgtctcctgtccagccagactgatggaagtttctgaagtcagctcttctccaccaccaccacagatcagctgctcatcgaccatcttactctccactacagattacatccaagccattagtggcgctattacactcctgagtacataaaacctatatggatgtataaaagactttttaaattttaatttaaaagccgtttgaccagtggtaggatggtcccccctttaatgtgagtcttggtcctcccaaggtttcttcctcctcctgcagctctgagggagtttttccttgcctccgcgctcactgggggttctgtattctgtattttctatgtgtaatgttttgcctgattctttgtcctgtaatcatgtttctgtaaagctgctttgtgccaacacctgttgtaaaaagcgctatacaaataaatttgatttgatttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113092 lncRNA downstream 89518 27613245 ~ 27614708 (-) True G83957
TU113084 lncRNA downstream 127560 27524295 ~ 27576666 (-) True G83950
TU113085 lncRNA downstream 181364 27522095 ~ 27522862 (-) True G83951
TU113055 lncRNA downstream 232220 27465259 ~ 27472006 (-) True G83923
TU113054 lncRNA downstream 254679 27428892 ~ 27449547 (-) True G83922
TU113199 lncRNA upstream 110962 27815850 ~ 27819864 (-) True G84045
TU113219 lncRNA upstream 148468 27853356 ~ 27855384 (-) True G84063
TU113220 lncRNA upstream 151387 27856275 ~ 27859160 (-) True G84064
TU113250 lncRNA upstream 293696 27998584 ~ 28005722 (-) True G84083
TU113252 lncRNA upstream 293696 27998584 ~ 28005722 (-) False G84083
XM_022673083.1 mRNA downstream 68819 27632645 ~ 27635407 (-) True LOC111193234
XM_022673080.1 mRNA downstream 95584 27526742 ~ 27608642 (-) False meis2
XM_022673085.1 mRNA upstream 125740 27830628 ~ 27848444 (-) False LOC103043566
XM_007257381.3 mRNA upstream 125740 27830628 ~ 27848444 (-) True LOC103043566
XM_007257379.3 mRNA upstream 160657 27865545 ~ 27873706 (-) True otub2
XM_007257380.3 mRNA upstream 170260 27875148 ~ 27880315 (-) True LOC103043263
XM_007257459.3 mRNA upstream 190067 27894955 ~ 27897940 (-) True fam181a
TU112771 other downstream 1234063 26434472 ~ 26470163 (-) True cga
TU112655 other downstream 1700541 25992499 ~ 26003685 (-) True G83612
TU112362 other downstream 2663208 25037235 ~ 25041018 (-) False LOC103040243
XR_002650359.1 other downstream 3068345 24630879 ~ 24635881 (-) False LOC103026430
TU111816 other downstream 3686570 24012634 ~ 24017656 (-) True G82991
TU113207 other upstream 129894 27834782 ~ 27838795 (-) False LOC103043566
TU113436 other upstream 639701 28344589 ~ 28356545 (-) True G84215
XR_002650375.1 other upstream 970710 28675598 ~ 28694982 (-) False rps6kl1
TU113680 other upstream 1370588 29075476 ~ 29076115 (-) True G84392
TU113916 other upstream 2103641 29808529 ~ 29810277 (-) True G84579

Expression Profile