RNA id: TU113127


Basic Information

Item Value
RNA id TU113127
length 1068
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id fam98b
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27815805 ~ 27822211 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caagccggttcaataaaggagctgttgagcattcagcatgagtctcacggccacacacacaacccagagccgccacaatatgATTCCAGCAGTACACTTAAACAGACTCCATCCATACATatccagatatttaaaaaaaaaacggaggtgtttgtgtgtgtttcggCTTCCAGTccgaattttttatttttcttaaatgaAGCTTTCCAAAAACACTCTCCAAACaggatgtttttgttttcagtgttatCATGTAGACAGGGTAAACAGCTTTatgaaaacactgaaattaagATATGCATGCTAAATCTCAAATACCTCACATTCTCACTCCCTATTTAGTGCATAAAACTGCAAAATATACAGACATTGCATATGGCACTACATTTAATGTTGTATTACAAACATATAATGCTCTGTTTCTCTATTAGACTTTAGATTCTGTAATTTTTTCTTCCATCATACGCTGTTTAGGGAGTAATGGATGCATGTAGCTCTGGGTAGTGATCAAACcttctttgttttcttctttggGGTTGATGTCTCTTTTTATAAGGTTCTATTGGCCCAATACAGTGTTAGCTTGCTCATACTACGTGCAAGTTCTTTTGTCTCTGTGGatggaaattattttaaaaatggagggagggagatcacatttttttttccttttttttttttttttatatccggATAAGAAGCAATGAGATTTTCTTGATGAAAAGTATAGGATTCATTGACTGATGTAAACTGAACTTTCAGCAGCTTTAAATTAGCCGCGGTAATCTAACAagtgacttttttattttttagaactttgtcgtatttttttttatgtttcttctCAAATCGTGTAActtaaatgtttttggacacgTTTATTTGACTATAGGCTAGAATTGAATAGGAAGTGTTATTGCATCTGTACGGTTTCTACAAATGCTGCCTGTTCCTAGGCAGTGAGTGTTGTGGACTAAGAATGATGTGGACTAActcaataaatatatgtttCCGTTTTTTCCTCCTTGCTGAAccttctgtaaaaaatataataaaacagaacTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113109 lncRNA upstream 115989 27704254 ~ 27704881 (+) True G83972
XR_002650373.1 lncRNA upstream 205303 27609242 ~ 27615567 (+) False LOC107197843
XR_001518812.2 lncRNA upstream 205303 27611543 ~ 27615567 (+) True LOC107197843
TU113068 lncRNA upstream 205320 27612556 ~ 27615550 (+) False LOC107197843
TU113070 lncRNA upstream 208415 27604237 ~ 27612455 (+) False LOC107197843
TU113131 lncRNA downstream 7238 27829449 ~ 27831584 (+) True LOC103044189
TU113132 lncRNA downstream 9766 27831977 ~ 27832246 (+) False LOC111193235
XR_002650374.1 lncRNA downstream 9839 27832050 ~ 27845966 (+) True LOC111193235
TU113147 lncRNA downstream 100858 27923069 ~ 27923358 (+) True G84001
TU113373 lncRNA downstream 479522 28301733 ~ 28360989 (+) True G84164
XM_022673084.1 mRNA upstream 181 27815832 ~ 27820689 (+) True fam98b
XM_007257384.3 mRNA upstream 6962 27770793 ~ 27813908 (+) True spred1
XM_007257394.3 mRNA upstream 314579 27428752 ~ 27506291 (+) True c9h15orf41
XM_015607875.2 mRNA upstream 314579 27429248 ~ 27506291 (+) False c9h15orf41
XM_022673079.1 mRNA upstream 314579 27431558 ~ 27506291 (+) False c9h15orf41
XM_007257383.3 mRNA downstream 2045 27824256 ~ 27829462 (+) False LOC103044189
XM_022673086.1 mRNA downstream 26466 27848677 ~ 27855382 (+) True LOC103043868
XM_007257377.2 mRNA downstream 33530 27855741 ~ 27858741 (+) True LOC103042318
XM_007257378.3 mRNA downstream 37983 27860194 ~ 27869973 (+) True ddx24
XM_022673087.1 mRNA downstream 58817 27881028 ~ 27894983 (+) False LOC103042002
TU113122 other upstream 1323 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 1073119 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 1073119 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 1312745 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 1421603 26392890 ~ 26399267 (+) False spata7
TU113547 other downstream 1148053 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 1148068 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 1177291 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 1181883 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 1218768 29040979 ~ 29041607 (+) True LOC111193240

Expression Profile