RNA id: XR_002650374.1


Basic Information

Item Value
RNA id XR_002650374.1
length 346
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id LOC111193235
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27831977 ~ 27845966 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGTTCCTGCACAGTGGTCAGATAGTTGACTGCAGCATATTCTATTACTGAGAGGAAGACGAACACAAAACTGACCCACAGGAACCCTCagcactaggagggtgaagacgaTGCCTCCtgactgatgcagcatcactaggctGAGGCTGCCAACATGCTCAGAGGAAGGTGTGAATGCCTGGATATCCCAAGATGCCTGTGCAGCACAGCATCaactaggagtgatgagaggaagaAATGACATCAACCCACCCTTAATAGAGTCTCCAGCTTGTGACCCCTCTGGTAAGGTGACATCCCGGCCACACCCATAAGGTAGGTACAGAGGAGCAGGACTACAGCATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113131 lncRNA upstream 466 27829449 ~ 27831584 (+) True LOC103044189
TU113127 lncRNA upstream 9839 27820870 ~ 27822211 (+) False fam98b
TU113109 lncRNA upstream 127169 27704254 ~ 27704881 (+) True G83972
XR_001518812.2 lncRNA upstream 216483 27611543 ~ 27615567 (+) True LOC107197843
TU113147 lncRNA downstream 77103 27923069 ~ 27923358 (+) True G84001
TU113373 lncRNA downstream 455767 28301733 ~ 28360989 (+) True G84164
XR_002650284.1 lncRNA downstream 482809 28328775 ~ 28331408 (+) True LOC111193142
TU113440 lncRNA downstream 527982 28373948 ~ 28374517 (+) True G84219
TU113497 lncRNA downstream 741430 28587396 ~ 28587954 (+) True G84264
XM_007257383.3 mRNA upstream 2588 27824256 ~ 27829462 (+) False LOC103044189
XM_022673084.1 mRNA upstream 11361 27815832 ~ 27820689 (+) True fam98b
XM_007257384.3 mRNA upstream 18142 27770793 ~ 27813908 (+) True spred1
XM_015607875.2 mRNA upstream 325759 27429248 ~ 27506291 (+) False c9h15orf41
XM_022673086.1 mRNA downstream 2711 27848677 ~ 27855382 (+) True LOC103043868
XM_007257377.2 mRNA downstream 9775 27855741 ~ 27858741 (+) True LOC103042318
XM_007257378.3 mRNA downstream 14228 27860194 ~ 27869973 (+) True ddx24
XM_022673087.1 mRNA downstream 35062 27881028 ~ 27894983 (+) False LOC103042002
XM_007257376.3 mRNA downstream 36823 27882789 ~ 27894983 (+) True LOC103042002
TU113122 other upstream 12503 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 1084299 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 1084299 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 1323925 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 1432783 26392890 ~ 26399267 (+) False spata7
TU113547 other downstream 1124298 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 1124313 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 1153536 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 1158128 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 1195013 29040979 ~ 29041607 (+) True LOC111193240

Expression Profile