RNA id: TU113147


Basic Information

Item Value
RNA id TU113147
length 290
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G84001
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27923069 ~ 27923358 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agcctttactgatttctgcccccaataatcctttcaataacctccaatagcctttaatagtcttcagcagccttcaacagtctaaccttgcagccgtggtgtgtccactaaactccgtagttataaacatcctgaggttagcagcgcgctaactgacctgtttataatgtaatccgagcagtgactccgtgacggctgctctaaactgctgctgttagctgcttgggctgaaagatgaactgtagagagctgtattatccgtttagtggggttaaaacctttatttccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650374.1 lncRNA upstream 77103 27832050 ~ 27845966 (+) True LOC111193235
TU113132 lncRNA upstream 90823 27831977 ~ 27832246 (+) False LOC111193235
TU113131 lncRNA upstream 91485 27829449 ~ 27831584 (+) True LOC103044189
TU113127 lncRNA upstream 100858 27820870 ~ 27822211 (+) False fam98b
TU113109 lncRNA upstream 218188 27704254 ~ 27704881 (+) True G83972
TU113373 lncRNA downstream 378375 28301733 ~ 28360989 (+) True G84164
XR_002650284.1 lncRNA downstream 405417 28328775 ~ 28331408 (+) True LOC111193142
TU113440 lncRNA downstream 450590 28373948 ~ 28374517 (+) True G84219
TU113497 lncRNA downstream 664038 28587396 ~ 28587954 (+) True G84264
TU113516 lncRNA downstream 782535 28705893 ~ 28723051 (+) True G84280
XM_007257375.3 mRNA upstream 1896 27906826 ~ 27921173 (+) True LOC103041699
XM_022673087.1 mRNA upstream 28086 27881028 ~ 27894983 (+) False LOC103042002
XM_007257376.3 mRNA upstream 28086 27882789 ~ 27894983 (+) True LOC103042002
XM_007257378.3 mRNA upstream 53096 27860194 ~ 27869973 (+) True ddx24
XM_007257377.2 mRNA upstream 64328 27855741 ~ 27858741 (+) True LOC103042318
XM_022673097.1 mRNA downstream 87156 28010514 ~ 28072594 (+) True LOC103040475
XM_007257365.3 mRNA downstream 156215 28079573 ~ 28085275 (+) False ttc8
XM_007257366.3 mRNA downstream 156216 28079574 ~ 28085275 (+) False ttc8
XM_022673098.1 mRNA downstream 157337 28080695 ~ 28085275 (+) True ttc8
XM_007257359.3 mRNA downstream 171005 28094363 ~ 28101936 (+) True ndc80
TU113122 other upstream 103522 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 1175318 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 1175318 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 1414944 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 1523802 26392890 ~ 26399267 (+) False spata7
TU113547 other downstream 1046906 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 1046921 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 1076144 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 1080736 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 1117621 29040979 ~ 29041607 (+) True LOC111193240

Expression Profile