RNA id: XM_007257381.3


Basic Information

Item Value
RNA id XM_007257381.3
length 4279
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC103043566
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27830628 ~ 27848444 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTACTTCAACATCATCACTTAttccacaaatacacacaaattctGGAAAATTTACCTAAAAGATTGTAATATGCATACTCCATCCTAAATCGTGCAGTCACCATAACTAGAAACATCCaccattttttgttattgtcattgctactttagttaatgctttaaaaatattggaCTCGTAGTCTACAACTAAGGGAGAGagatgttaaaaaatgtaatataaggcTTTTGATGTTCTTGGTCCATATGGCCGTACCCACAAAAATTCTTTTCTAGGCTTCTTTTCATACTTTCTATTTCTAGTTCAAGAGCACCTTGCACATCTTACAGATCTGCCTTTGGATATTTTGAGGCCTAATTTAGCACAGCACTGCCTGGACTGTAGGTGTTCTCAGGGCAAAGAGTGCTGCAACTATGTGCTCAGCAGTTTACTTAATGCCTACAaatgtttatatgattttttaggtgttattttgtttctttgatGTTGAATTTGATTATTCTGTCTCCAGAACACAACTAGTATACAACAAGGCTGGAATGCTTGATAGATACGTCCAGCAGATGGTGCTATACACAAGAAATTCATGGTTGTAATTCAGTCTACAGAAACAGCTGCTGTATTCACGCTGCacataaagaataataaaactgGCAGATAACTTTAAACCTATAGCATAAACACAGACTGAACATAAACTACAGCTTAGCTTACTTCAGGATTTTAGCAATTACTGTAGAAAGGTATGGACAGCACagcatctctcaaaagtgaagcaaCCGCAGGTCATGCGATATGTAGCTTTGGCTATTCCAATAACAATGCAACAGCCCATTTTACAGTCTGGACTCCAGCCTGGGTGTAAATTTGACTTGTTTGGCTTAATTTCTATAGAATGAAAGGGAATGAACCACAGTGTTATGTTCTTTTGTGGTTACTGTGTTAATATCCAATATTTAAACTGCTATTTCAATTCTAtataaggaaaatataaaaatttagtGTCTGTGTGACTCCCCTCTCCTGTCATCAGTGTGTCATTACCTACAGCCTATTTAAAGCAAATAGTCTAAAATGCAAAGTTTAGTATCTTAAGGACATTAGGCTTAACAGGTACAGGAAACCTCAATGTTATGTGACATGGGTTATGGGCCTACAATATACTAGTAAATGCAAGTGTTATTGAggatatcagaaaaaaatagaatctTTCCTAGTATAAATTACAGTATAGAAAATGTAGGAGCTTTAATTAGAAAAAGTTAGTTGCTGATGTAGCTTGTGGCATTTTAGGCTAAATCTACTTGctataaatgtttttgtaattatGAGTTTAAGTGGATGAAAGCTGGACATCCAGACAAAAGCATTCTTAACAATGCCAGCATGGgtaagcttggtcatactgggtATCTAGCTTGCTTTGGTTGATCATACTTGTTGACcaaataaactattaaacttAAACATACCCTCTACCTTAGTCAAAATATAGGGTGGTAAACCAGCTTTACACTCGTGAGCTGGCCATGTTGTTTTTCAGCAGGAATGGGTACCGAAATTGTGCCATTTTGCACACTGGTTTAGGCTTATGCTTTGTGAACTTTACTGCCTGAAAAGACAGTATAAACTAAATGTTATCAATAATGTATAACCATAAGAACCACtgcttctcattttctattcaGAATTTCATTACTGCATTCCCACTTACTAGAATTAGGTCACTAAGATCACAAATCCCAGCATcaaacacacacgctcacacgttTTTAACTCCAATTTTTAAAGTGACTCTTCATAGAACTAACCCAAATCTACGATGATGGCCACAGCtggtttttactgttttttatctctGTAGGTGTGTGCACTATAAGTTACTAAGCCACTGTTTTGCAAGTGCTAGATTTGTGTTAGATTTGTAAACGCTTGTATTACAGACTGCTGTAATGTACAGTCATGTGCAGAATGCAAATGTCACAGAGGACTTAAGTCCATCCAAGCGCGATTGTAAAGCCCAGTATTTTTAGAGAAATTCTTCCCAAATGCAGCCAGATTGGATAATCTGAGCGCACTGAAAGGGGGGCCAGCGTCTCGCAGTTAgtgctgctgtctgtctgtgcaGCATCCTCCATCCTCGTGACTGACCTCACAGTGAAATGCAGAGCAGTGGATCATTAGGAGAATTGGTTCGGGGCGGTGCAGAGCAGAGCACGGCACATTCACCACTGGAGGGATCAAATCTGTGCCATCTGACGCTCAAGGATTTATGGGTTTAGTCAAAATTGCTTTTCCCAGTGGGGAGATTAAGCACTGAGGGATGTTTACAGTGAAGGCAGAGCTGTGTGTTCTTCTTGAGCTCCAGTGCTAAAAAAGAATGTCCTCCTCGGCTGTGTGTTCAGGAGCTGCTCCTGCCCGTGAGGTGTGCGGAATCTGACCGGAGGTGCTGTGTAAGGGTATGTGCACCATGCAGGCAGATGCTGTAGTCCTGCTCCTCTGTACCTACCTTATGGGTGTGGCCGGGATGTCACCTTACCAGAGGGGTCACAAGCTGGAGACCTATAAGCAAAGCAGaactcggagagaaacagaaatggTGCAAGGAGGAGTTCAGAAGTCTGGCAGTCCCATCTTCAGAAGAAGTCCAGATATGACAAAATCACCCATGACAAAATCTGAGCAACTATTAAGGATAGATGACCATGACTTTACAATGAGGCCAGCGTTTGGAgGACCTCCTATACCTGTGGGAGTAGATGTTCAGGTAGAGAGCCTTGACACTATCTCTGAAGTTGATATGGACTTCACCATGACTCTGTATCTGAGACATTACTGGAAAGATGAGCGTCTTTCTTTCCCAAGCACCAACAACCAGAGCATGACCTTCGACAGCAGACTGGTGAAGAAGATCTGGGTGCCAGACATGTTCTTTGTTCACTCAAAAAGATCTTTCATCCATGACACTACGACAGACAACGTGATGCTGCGTGTTTATCCTGACGGAAACGTGCTCTACAGTTTGAGAGTAACAGTCACCGCCATGTGTAATATGGACCTGAGCCGTTTTCCTCTGGACACACAGACCTGTTCACTGGAGATAGAGAGCTACGCATATACTGATGATGACCTCATGCTGTATTGGAAGAAAGGTAACGAGTCTCTGAACACGGATGACAGGATCTCACTCTCTCAGTTTCTCATTCAGAAGTTTCACACAACTACTAAGCTGGCTTTCTACAGCAGCACAGGTTGGTACAACAGGTTGTACATCCATTTCACCCTTCGGCGTCACATCTTCTTCTTCCTGCTGCAGACGTACTTCCCTGCCACGCTGATGGTCATGCTGTCTTGGGTGTCCTTCTGGATTGATCGCAGGGCTGTGCCTGCTAGAGTACCTTTAGGTATCACTACAGTTCTTACAATGTCCACTATCATCACTGGGGTCAACGCCTCTATGCCACGTGTTTCCTACATCAAAGCAGTGGATATTTACCTGTGGGTCAGTTTTGTGTTCGTCTTCCTCTCAGTAATAGAATATGCTGCAGTCAACTATCTGACCACTGTGCAGGAACGCAGAGAGAGGAAGCTACGAGAGAGATTGCCCTGTACGTGTGGTATAGCGAACCCAGACGAGGACATGATGATGACCACTGGCTACAGTGACATGGAGCAAAACACCACAGGGAACTATGGAATGCCAGAGAACGGAGGGAGGCAGGAGAGGATGTTGGCCCAGTTTACAATAGCAGAAAGTCAATCCACCAGACCAGTGAAAAGCTCAAGAGGCTACGTCAACATCTGGATAGACACCCATGCCATAGACAAGTACTCAAGGGTGATCTTTCCAGGAGCGTACACCCTTTTCAACATCATCTACTGGTCCATCTACTCCTAACACAACAAAAAGACAGAGGAAGGCACCTGCCTCAACCAGAACACTTAAAGACAGACAGTCCTATTGTTCTATTCATTGAGGATACAATGAATATTCACTATGGACTGAGACATTGACAAACGGAATTAAAAAGGTACCGTCCGCCTTCTTTATGCTTTGTCTTGAACagtttgtactttttaaaaatgtgttttgtttcttgtattttattaacAGTCTTGGAGCCTTTCACTGAAATATTTAACTATTATGGTGTGACTACAAAGGTTAAGATTCAAGCTGTTCAGTACATGTGGTTGCTGTGACAGAATGAATTACCAGTTATAAGTTTCCTAGAATGGAAAACTCTTTAACTTTTCATAGTTAAATAATGACCAAAAA

Function

GO: NA

KEGG:

id description
K05190 GABRR; gamma-aminobutyric acid receptor subunit rho

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113199 lncRNA downstream 10764 27815850 ~ 27819864 (-) True G84045
TU113110 lncRNA downstream 125740 27704226 ~ 27704888 (-) True G83973
TU113092 lncRNA downstream 215920 27613245 ~ 27614708 (-) True G83957
TU113084 lncRNA downstream 253962 27524295 ~ 27576666 (-) True G83950
TU113085 lncRNA downstream 307766 27522095 ~ 27522862 (-) True G83951
TU113219 lncRNA upstream 4912 27853356 ~ 27855384 (-) True G84063
TU113220 lncRNA upstream 7831 27856275 ~ 27859160 (-) True G84064
TU113250 lncRNA upstream 150140 27998584 ~ 28005722 (-) True G84083
TU113252 lncRNA upstream 150140 27998584 ~ 28005722 (-) False G84083
TU113253 lncRNA upstream 150140 27998584 ~ 28005722 (-) False G84083
XM_022673083.1 mRNA downstream 195221 27632645 ~ 27635407 (-) True LOC111193234
XM_015607889.2 mRNA downstream 221986 27530449 ~ 27608642 (-) False meis2
XM_015607891.2 mRNA downstream 222616 27530449 ~ 27608012 (-) False meis2
XM_015607890.2 mRNA downstream 222616 27530449 ~ 27608012 (-) False meis2
XM_007257386.3 mRNA downstream 223779 27526742 ~ 27606849 (-) False meis2
XM_007257379.3 mRNA upstream 17101 27865545 ~ 27873706 (-) True otub2
XM_007257380.3 mRNA upstream 26704 27875148 ~ 27880315 (-) True LOC103043263
XM_007257459.3 mRNA upstream 46511 27894955 ~ 27897940 (-) True fam181a
XM_022673094.1 mRNA upstream 80110 27928554 ~ 27997121 (-) False unc79
XM_022673091.1 mRNA upstream 80110 27928554 ~ 27997121 (-) False unc79
TU112771 other downstream 1360465 26434472 ~ 26470163 (-) True cga
TU112655 other downstream 1826943 25992499 ~ 26003685 (-) True G83612
TU112362 other downstream 2789610 25037235 ~ 25041018 (-) False LOC103040243
XR_002650359.1 other downstream 3194747 24630879 ~ 24635881 (-) False LOC103026430
TU111816 other downstream 3812972 24012634 ~ 24017656 (-) True G82991
TU113436 other upstream 496145 28344589 ~ 28356545 (-) True G84215
XR_002650375.1 other upstream 827154 28675598 ~ 28694982 (-) False rps6kl1
TU113680 other upstream 1227032 29075476 ~ 29076115 (-) True G84392
TU113916 other upstream 1960085 29808529 ~ 29810277 (-) True G84579
TU113907 other upstream 2010533 29858977 ~ 29930575 (-) False hpcal1

Expression Profile