RNA id: TU113220


Basic Information

Item Value
RNA id TU113220
length 2192
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G84064
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27856275 ~ 27859160 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAAGAGACTGCCTGCAGAGTTGAAGAGAACTGCATGATACTATAAATACAGGAATATCTGACATTTTCACTTAAGCCTGAATAAAAATAACCTTATAACCTCCTATGTTATGTGCCAAACATTGTACTGATGCTTTCAAAAACAGATCTCACCCATTCAACTCCAACAGAAGTGAGATGTAGTATCTGGCACAACAACCTTAGCAGCAAATTCTTTATGTCCTTGTCAAAGTCGTTCAATTTGTTCCTGCTTCCAAGACACCAACTTCAATAATTGACTGTTCACATGCTGCCTAAAATGTATATCCCACCCAGTGTTCTTTACTTAATCTCACAGTAGTTTTAAAGTGTTGTTGGTCAGTGTATATGCAAGTATCTCCCTTTCCAATTCTTCCTAGAGATAAATGAAGGAAACCAGATAATATGGATATTAGTTTTAATCCCAGAGAAGACAGAAGTGAACATGATCAGAGCTGAAAAATAACTGATTCTTATCAGGGCACGATGAGATGGCAGCACTGGCTGATTCAGTACTTTGTGGGGTCAATCACTCTGCCCATGAAGAGCAGACTGTTGGTTGCTTCATGGTatataaagaagaagaaaggccTGTTCACAGTGAAGGTAGTCGGCATAGAGTATGCAGTGATTCCCACGGTTGTTGCTGCTGCAGCTACAGTGCCTTTCTCGTCCACTTCAATCACAGCTTTGTGCAGAACCTGAACACACAACATGAAGAATTAATAATAAGTGAAGAACagtttattatactgtacacaGTTTCTgtacttttatatattatatccaACTGAACTATGTAGGCGACACGTTATCATCCTGgccaacagtttttttattatcaacTATGAAATTAATGCCACTGCTGTAATGCTAAATCACTGCCTCTTCATTGGTCTGTTATTTCCTTTAGCAGCTGACCAAACCTGGCAGTTCTCTTTTAATAAGAGGTCATAGTTTCTtgaaaacatattaataaaatgcaCCATAATGACttggcaaaaatattttttacaatcgtctgtaaagttgcagttttggagatttattttgttttgcatgaCAGTGACATACAGACAGTAATCAGTATAATAAAGCAGCTATGTCAcatataaatattcacactgacCTGTGAGACTTTTATACCAGATTCCTGACTCATGCCTTTGAGGTTAGCCGAGTATGTGAAGACATTCTGAATTCCCATGGATGGAAGAATCTTGTGCAAAGAATATGACTGTTCCAATTTAAATTTGGGTATGTAGACTTCCAGTTTTCTTTTTTTTCAGGTTCTTGATCCAGTTTAGAAACCTCTCAGCATTTATTTCATCATCTATGATGGTATAATCAACATTGCTGTCAGGAAGGACAATGAGCATAGCTGCGCCACCCAAATAGGGCAGACGCAACACCTTAGCCTTGAGCTCGTCATCACTGGCAATGTAGAACTTATCTGTACTAAACATCATTGGCACCTGGACAATATTATATTTGTCTATATAAAAGCGACTTTTTTCAGTGTTGTTTGGGTTGAAAGGTCTCTCCCAGGCACCtggaaaaaaaaatggtattgATCAGCATCATCTGAGTCAGGGGTTCAATGCTGGACACTATCTCTTTCACTTTATCCCCAGTTTTCTTCCTCACATGTTTATTAATTGTCTCCTTACTGATGTCAGCTTTACCAAAGTCCACGTTTTCGACATCAGCATCAAAGAACTTTTTGATCTGATCACTGAAAGCCCTCTCTATTTGGAAATGCAGGTCCACGAAGAGTGCTGTTCCCTGGTCCAGTTTCAGCGCTCCGTCATGGGTGATGTTCCCCTGGAGGTGCTGGAAGAGCTGAGGAATGAGCTCAGGCTGCCCATTCTGCTCCAGCGTGTCCAGATTCAGCCCTGACAGGATTTGGCTGCGAGTGGAGTTCCTGGCTGCCAAAGATAGTGCGGCGAATGCTGTGGAAACACTCAGCGGCGAGAAGAAAATGTTGTTGTCGTGCTGGCTTGAAATCTTACGATAAAGGTTCATGGCAAAGTCTATATTCTTAAAGGTCAGATCAGTGATGTTAGGAGTTTCCTGAGTCTGGAGGCTAGACTTGAAAAaggaaacacaaataaaaaggaACAGCAGCACTCTGTACTCCATCATCGTCATGATAATCTTCTTTCAAGGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113219 lncRNA downstream 891 27853356 ~ 27855384 (-) True G84063
TU113199 lncRNA downstream 36411 27815850 ~ 27819864 (-) True G84045
TU113110 lncRNA downstream 151387 27704226 ~ 27704888 (-) True G83973
TU113092 lncRNA downstream 241567 27613245 ~ 27614708 (-) True G83957
TU113084 lncRNA downstream 279609 27524295 ~ 27576666 (-) True G83950
TU113250 lncRNA upstream 139424 27998584 ~ 28005722 (-) True G84083
TU113252 lncRNA upstream 139424 27998584 ~ 28005722 (-) False G84083
TU113253 lncRNA upstream 139424 27998584 ~ 28005722 (-) False G84083
TU113301 lncRNA upstream 200857 28060017 ~ 28114357 (-) True G84109
TU113293 lncRNA upstream 208056 28067216 ~ 28072498 (-) True G84107
XM_022673085.1 mRNA downstream 7831 27830628 ~ 27848444 (-) False LOC103043566
XM_007257381.3 mRNA downstream 7831 27830628 ~ 27848444 (-) True LOC103043566
XM_022673083.1 mRNA downstream 220868 27632645 ~ 27635407 (-) True LOC111193234
XM_015607891.2 mRNA downstream 248263 27530449 ~ 27608012 (-) False meis2
XM_007257379.3 mRNA upstream 6385 27865545 ~ 27873706 (-) True otub2
XM_007257380.3 mRNA upstream 15988 27875148 ~ 27880315 (-) True LOC103043263
XM_007257459.3 mRNA upstream 35795 27894955 ~ 27897940 (-) True fam181a
XM_022673094.1 mRNA upstream 69394 27928554 ~ 27997121 (-) False unc79
XM_022673091.1 mRNA upstream 69394 27928554 ~ 27997121 (-) False unc79
TU113207 other downstream 17480 27834782 ~ 27838795 (-) False LOC103043566
TU112771 other downstream 1386112 26434472 ~ 26470163 (-) True cga
TU112655 other downstream 1852590 25992499 ~ 26003685 (-) True G83612
TU112362 other downstream 2815257 25037235 ~ 25041018 (-) False LOC103040243
XR_002650359.1 other downstream 3220394 24630879 ~ 24635881 (-) False LOC103026430
TU113436 other upstream 485429 28344589 ~ 28356545 (-) True G84215
XR_002650375.1 other upstream 816438 28675598 ~ 28694982 (-) False rps6kl1
TU113680 other upstream 1216316 29075476 ~ 29076115 (-) True G84392
TU113916 other upstream 1949369 29808529 ~ 29810277 (-) True G84579
TU113907 other upstream 1999817 29858977 ~ 29930575 (-) False hpcal1

Expression Profile