RNA id: TU113253


Basic Information

Item Value
RNA id TU113253
length 636
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G84083
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27998584 ~ 28005722 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGACATACCATTTCAAGACGTCTTTAATGGtgcacacacttatacactggATACTTCGTTTGGATTAAAGAATTTGGATTAAAATGCTTTTAGGCCTGAGAGGATGGGTGAGAGCTCTGGCACGAGCAAAGCTACCCCAACAAGATCACAGGTCAAACATCCACTGCAAACCACCTAAGGACAATATTGGACCCGGGCAAACAGTGTTTACCATGTCCGTCTTTGCACTTGCTCTTCTGGTCCCGGCGGGTTGGATCATGCACCATATTCCAGTTTACAAGCaaagaccacctcctgaagtctGACCTCATGGCTTGTCTTCAACACTTCTCCTGAAATATATACCATACAGTATACAACAGTTATTgttgactttaataaataatgttaatagtACAGAATACTGACTGGTGTTTTCCTCTGTGAAAAGAGATGATTATTATCGGTTACATTAGTAGTACTACCGGTACATAACGGGTTTGGTGCCAGAATACATAAAAATGGTTTACTGATGAGTAGTGAGGTTTACAAACACAAGACATGACAGTATTGTTTGGTTAATGCTCCATTATCACTCATTTTTAATTGGCATGACGATTATTATTGatagtgtaatgtgatgtattggtttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113220 lncRNA downstream 139424 27856275 ~ 27859160 (-) True G84064
TU113219 lncRNA downstream 143200 27853356 ~ 27855384 (-) True G84063
TU113199 lncRNA downstream 178720 27815850 ~ 27819864 (-) True G84045
TU113110 lncRNA downstream 293696 27704226 ~ 27704888 (-) True G83973
TU113092 lncRNA downstream 383876 27613245 ~ 27614708 (-) True G83957
TU113301 lncRNA upstream 54295 28060017 ~ 28114357 (-) True G84109
TU113293 lncRNA upstream 61494 28067216 ~ 28072498 (-) True G84107
TU113411 lncRNA upstream 260448 28266170 ~ 28267487 (-) True G84197
TU113456 lncRNA upstream 415262 28420984 ~ 28424692 (-) True G84229
TU113496 lncRNA upstream 562749 28568471 ~ 28568719 (-) True G84263
XM_007257374.3 mRNA downstream 1463 27928554 ~ 27997121 (-) False unc79
XM_022673100.1 mRNA upstream 67137 28072859 ~ 28079529 (-) False LOC103039744
XM_022673099.1 mRNA upstream 67137 28072859 ~ 28079529 (-) True LOC103039744
XM_007257368.3 mRNA upstream 67137 28072859 ~ 28079090 (-) False LOC103039744
XM_007257367.3 mRNA upstream 67137 28072859 ~ 28078215 (-) False LOC103039744
XM_007257357.3 mRNA upstream 80662 28086384 ~ 28090632 (-) True LOC103037016
TU113207 other downstream 159789 27834782 ~ 27838795 (-) False LOC103043566
TU112771 other downstream 1528421 26434472 ~ 26470163 (-) True cga
TU112655 other downstream 1994899 25992499 ~ 26003685 (-) True G83612
TU112362 other downstream 2957566 25037235 ~ 25041018 (-) False LOC103040243
XR_002650359.1 other downstream 3362703 24630879 ~ 24635881 (-) False LOC103026430
TU113436 other upstream 338867 28344589 ~ 28356545 (-) True G84215
XR_002650375.1 other upstream 669876 28675598 ~ 28694982 (-) False rps6kl1
TU113680 other upstream 1069754 29075476 ~ 29076115 (-) True G84392
TU113916 other upstream 1802807 29808529 ~ 29810277 (-) True G84579
TU113907 other upstream 1853255 29858977 ~ 29930575 (-) False hpcal1