RNA id: TU113293


Basic Information

Item Value
RNA id TU113293
length 5258
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G84107
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28067216 ~ 28072498 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAATTCAAAATTCATTTCaagaaatgtaattatatattaaagtaCAATCAACATACTTATTTGAAAAAACCTGTATCAAACCACAACGTGTTGTCTTGAGTTAAAGGtacctaaaaaagaaaaatactatTTTCAAGGTCAAAATCATGTACATGAGGCAATACAGGCAGTTTAGAAACTGACAGATGAATGTGGGCTCTTACGAAGGCTTGCATAGGCCAAAATCACTTATTCTCCTAAGAAAATACTTAAGCCTCTGCCAGGCAAGGCACAGACATTTGGGTCTTCTACAGTGTTAATGGATGCAAGGAAACCACTAAAGCCCTCAGATCAGATCTTagaatatttttctttacatttgttCCCCAAATGCAATGCATTAGGAAATGAATACAGATGCATTTCACTGTTTGTTCATGTGTATTAACCTTATCTTCTTGTGCTACTGAAGTAAATTGATAAGCAGCAAAACAGAACCAGAGTGCGTAAGCAGCGTTTGCCTTAAAGGGCTTTCCCACAGTACAGACAGATGAACATAGGTGAATaatgtacttttcaatgatgcTCTTGTAAAGCTATCAACAGCACACTGTATACGATTCCCGTCCACACATATCCAGATATCCGAATTTCcttctctgttttacattttgcagtttttatttttatcccacTTTTCTCCCCATTTTAGCTATGCCGATAATCTGACTTCCACTTTTCAGCTGTACttccatcactagtgatgcccttacaccaggagggtgaagacttgcacatgcctcttccgatacatgtgaagtcagccaccgcctttttttcgagctgctgatacagcattgCAGAGTATAAATCACAGcgagcttggaggaaagcgcagtgacttggttccaatacatcagctcacagacaccttgtgctgatcgacatcaccttttggagtgatgtggcaagagagcaccatctacccactcagagtgCACGACTCTGACAGCCAATGGCAAGcggcatgaccaggatttgaaccagcgttctcctgatcatagtggcagccccttagtccgctggaccacccGGAGGCCATAATTTAGCAATTTTTGCATGAGCATGGTAGCCCTGTATTGGGCAGTAGTACCTCATAATTAGAGACAGCAACACACCATGCAGAGGTTTAATCCCAAATTATGCAATACTCCCCAAGTCGTGCAGCATGCAAGGCACAAAGTGACAGATTCTAAATCTAAACATAGcattatatatgtaaattggGCAGAATTTACATATCTCAAAATCTGAAACTAGTGCCATATGTATGTAGACACTGGTGGTCTATTTAGGGAGAATGAAGATATTTCAGATTTCCTTGTCCATGTAACACTAAAAACAGTAAGTTTTCCATTATCTCCACTCTTGTAttcagtgattaaaaacaatgtttgagTCCAAATTgctacacccccccccctctcatTTACTATAcagtaaattgtattttttcagtaaagaGAAGAGGTTTTCCGATAATCAAACTAAATGAGCATCAtacagaacagcaaactcaaattgCATTACCTGTGTGCAGCAACAGGGGAATTAcatggaggcagagcgaggtagaggtcCACTGTGAACGCACAAACCAAACTGCTTCTTGGCCTGGAAAAATGAGTGCAGCAAATGCTTAAAACCTTTGATGAGGTTAATCTAATTTAGAATATTTATCGCAATTATTATCAAAATTGTATGACACATTAAATGTTTGTGTCCAAATCGCAAACCCAGAATATCCTGGATACATGTGGACAAGGCCTAGGACTCACAGCAGAGTGTTGTTGAACTTTCATGTCTATAACGCAATGATGTGTCCAGCAAAATAAGGAGTATGCAAACAATCTATGAGTCTGTGGAGTATTACATCATGTATCATACAACTCTCATTTTGGGTCAAGCATCAAAAATAGTTACCTACTGTCATACttttcactttcaaacacacacaatcactaaACATGCAGCCTAATGACAAACATACAACAGGATGCATCAAATACTACACCCTATTTTCCTGTGTGGATTTTATGTGGACTAAACTAACATTGGTGAGATGACCCTTATTTCAGTAGCTATCCGTCAAAAGACCAAAACTTATCACAAGCCTCTCTGGCATCCATATTTACCACTAGGTGGCAAAGCTAAGACTGAAATCTGATGACAAACCAATCAAACAGCTAGAGCTCACTGCAAAGTTTAGTCTCCAGAAAACTCTGAGCTAAATGAAGTTTAGGGACCAGAAGAACAATCAGTAAATCCATGCCATGAAAATAAGGAATGGCTTGCAGTCTTCCATGGTCTCTGAGAGCAAAACCCCACAGCTAAGGCCACTGGATGTAAGTGAAAAGGAGGTGAATTCAAGCATGTTCAGTATGTTCTCTACAGTACGTGGATTATTCATTCTCAAGGCTGGTGCTAATGTAAATATTGAACAGTCCTGATTAATTGTAGAAACTAGGAGTCTTAAATAATTGAACCATGGATCTAACAATGAAGTGTAACTCAATCTCTATATAAACGTCATTCAAATCCTCACATATGAATACAACACTGGGAACACAATACTACTAAAAGACATGGCCAAAACAATTCATCAGTTCATCATACAGCAATCCAGAAGAGTTTCCGAAGTCAGTTTCCCCTGATTATACAACcactttatatttttcttttaccaaCTGATACTGTTTCATAGCATCAGTCGCCATCTATACATGCACATTCTAAGGAACATTTGGAAAAAAAGCAAACTACATATAGAAAATCACATTTCCCAATACTTAAAGTGTATGTCAACACAGCAAGTAAAAGTGGCCAAAATACAATTTCTTTGTGTCATTTGTGTGGCAATtggaatggtaaaaaaaatacatacatgtatGAGAATCTTATAGATATCCAATTTGAAGCAATAGATTGGAATTTATGCAACCTTTATAAAAAGGGAAAATGGATGACAGTACTGAGGGAGGTTTTCAGTGGTGGGATAGTGAGGTAACAtaccttatatatattttgggtcGTAGTAGCATAATTATGGTAGCTTAATATTTGTTAGTAGCTTAAGTTTTCTAAGGATTATCTGCTGCGTACAGGTATCTAAAAACAACTGGAAATAATAGCTTTCAGGTGAAAATGATTCATTCTAAAAGTCAGTTTGTCAGGTCCAAACCCAGAAATTAAAGACTTGCATATTTATCAAACCTATCACAGTAACCAGTACAAAGTGTACTGTCTCTTCTTCAGTGACCACAATGTAGCCTAGCCTAAAATATTCTTTACTGAGCTTTTGTGAAAGACCTCCCTAATATTTAGGGTGATGCCTCTGTTCAAACTAAATTGTGGTAGGATTGTGTctaaataaatgatcaaatgCAGCCACAGGAGGATATGAAGTATCCGCTGTAATTCCTGTTTCCTGATTGCTTCTGTGGTGCTGATGAAAAACTGGAAACTGGATGTGTTGCTCTTTTGCACAAGTGTCAGATTAGGATTGTGAACTGTTCAGACGACTGTCGGATACAAGTCGCATTTAAAAGGTGTGGACAGTATGTGAACACCCAGAAAAACATCAGACTtaggccacttttacctgctgtgtgaacgtagctGTAGCACAATAGATATGGTATGTATACTGAAGAGGTAAGGTCATCATGCTTATAGGTATGGCCATGTAAAACCAGTTGCCCTGATTCTAGACAGTTTTAGAGGAACAACAGGTAACTTTGGACTATTGTGAACAGTCAGTATGGTTTTAAAgcttatttgttttgttgtgtaAGGATTGCCTACTGCCTATAAGGATTAGTATGAGGACCGCCTACTGTCTACAGGATTCTGAAAACAATGGGCAATAATAGCTCTAAATTTCTGCCAGGTCCAAACCCAGAAACTATGACATGTATGATTACCAAACCtaccacaaaaataaaaaccctAAGTGTCCTTGTCCCTCCTACAATGACCACAATAGAACTGATCATATTCCTAATGTCCTGTGGCCTAAAGCATTCTTCGCTAAGCTGTGTAGGTTTCACATGGCAGATAAACTATAGGGAAGGAAACTATAGGGTATATACTGTGGAAGTGATGTCCTTTTATTATGTTCATGTAGGagttttatttagtgtatttttccccccattttcAATGTTAGGCATATTTTATTGATGCTTCCCTCATCATTGCGCATAACCACTGTGCCTCATATAACTAAATTATTCTGTGTGAAAAGGTAATGTGTTTAAAACTGAAAATCAAAACACAACGTTTAATTCTCAGCATATCTTACCCACGAAATTTAAAACCACAAAACTTCATTCATTCTCAACTAGCTCATGCTAAAAATTCCACAACattctgaaataacaaatagtTTTCTCTTCATTCCATTCTCAAGATTTAACAATCTACTAGACTTGAGTAGACTTCAGTCTTTGTCCTAATATCACAATTCCCTTTGTGTCACCTCATTTAAAGTGCAGATTTCTTATATTGGTACTCTGGCTTATTGGGTGACCTGTGATCCCGGCTTATCCCTGCTTCTTCACTACTGGACCTGTGGTGCCCAATCGCTGCAGAGGGCTCCCTCATGCCCCCCGTTTCGTCTGTGACTGGCGTGTGCTCCTCATAAGGGTCTGCACCAACCCTTGAAGGTCCAAGACCACATATTAGGTCAGAGTCATTTATTGAGCGCCCACTGGGCACAAGTGCTCCTCCTACTGAGGGTCCTCCAGAGGAGGTCTGGGCCAAGTCTAGCCTTTGACCCAAGACATCCAAATGAAGGGAGTCCGATGGCTGTCCTAGCCTGCCCTGGGAGTGCAATGATAGGGAAGTGTCGGGCAGATACGAGAGGTGCAAGCTGTTGTATGCGCCTCTGCGGTGGCCGTACAAGTCTGAGCCTGTGTAGGTGGCCTGAGGAGGATGGCTAGATGTAGGGGCGTCTGTTTGACTGGAGAAGTCATAAAGGTCTGGATACTCAGACTGCAGTTCAGGTTTTTGTTTGGGGGGATGTCTTTTGCAGGGAAGATGAGCCAGAGAGTGTCTTCCACTAGGGCAGGGTCCAGTCGGGTAGTGAGGCATGGAAGAAGCCATACTTGGATGAGGACATGAGTGAAGGCCGAGGTTCTGAGCCTCACTGTGATCTGACAGGGTCATAGCAGACACTCCGAGGGCGATGTCCGGCATGTAATCACTTAGAGGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113250 lncRNA downstream 61494 27998584 ~ 28005722 (-) True G84083
TU113252 lncRNA downstream 61494 27998584 ~ 28005722 (-) False G84083
TU113253 lncRNA downstream 61494 27998584 ~ 28005722 (-) False G84083
TU113220 lncRNA downstream 208056 27856275 ~ 27859160 (-) True G84064
TU113219 lncRNA downstream 211832 27853356 ~ 27855384 (-) True G84063
TU113411 lncRNA upstream 193672 28266170 ~ 28267487 (-) True G84197
TU113456 lncRNA upstream 348486 28420984 ~ 28424692 (-) True G84229
TU113496 lncRNA upstream 495973 28568471 ~ 28568719 (-) True G84263
TU113498 lncRNA upstream 514882 28587380 ~ 28588098 (-) True G84265
TU113614 lncRNA upstream 670097 28742595 ~ 28743620 (-) True G84332
XM_007257374.3 mRNA downstream 70095 27928554 ~ 27997121 (-) False unc79
XM_022673100.1 mRNA upstream 361 28072859 ~ 28079529 (-) False LOC103039744
XM_022673099.1 mRNA upstream 361 28072859 ~ 28079529 (-) True LOC103039744
XM_007257368.3 mRNA upstream 361 28072859 ~ 28079090 (-) False LOC103039744
XM_007257367.3 mRNA upstream 361 28072859 ~ 28078215 (-) False LOC103039744
XM_007257357.3 mRNA upstream 13886 28086384 ~ 28090632 (-) True LOC103037016
TU113207 other downstream 228421 27834782 ~ 27838795 (-) False LOC103043566
TU112771 other downstream 1597053 26434472 ~ 26470163 (-) True cga
TU112655 other downstream 2063531 25992499 ~ 26003685 (-) True G83612
TU112362 other downstream 3026198 25037235 ~ 25041018 (-) False LOC103040243
XR_002650359.1 other downstream 3431335 24630879 ~ 24635881 (-) False LOC103026430
TU113436 other upstream 272091 28344589 ~ 28356545 (-) True G84215
XR_002650375.1 other upstream 603100 28675598 ~ 28694982 (-) False rps6kl1
TU113680 other upstream 1002978 29075476 ~ 29076115 (-) True G84392
TU113916 other upstream 1736031 29808529 ~ 29810277 (-) True G84579
TU113907 other upstream 1786479 29858977 ~ 29930575 (-) False hpcal1

Expression Profile