RNA id: TU113373


Basic Information

Item Value
RNA id TU113373
length 1954
lncRNA type read_through
GC content 0.38
exon number 2
gene id G84164
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28301733 ~ 28360989 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATATTGTGCCATATCTATAGAAGCTAAAAAGCACTGTATGTGGGGTCTCTCGCATTGAAcgtgaatgtgatttctgccagagtcgctTCACAGTTTGTTCACACGGAtcattctagccagatgccaccagtcatgatcattaccatttacagtaagcactttctactgtgggtggtaaggCCTTCTGTGAGGGTTTCCTTTTTACACACGTAACACTGTGGATCAAAGAATACTAAATGCCTGAGCAACTTAATAAAATGTTCCATCcacctggcacccactatcaggcctctcTTGAACTGAAAATTCACTCCAGCTTATCATGAggatgctggccagtgttcaccCTCACTCACGATATCACCTCACAAGGTTTTGTACAGGCATAGGTGTTCCCAAGACATTTTGTGAAGTAACACttaatgatcaatttacatacttatGTCCTTTTGCCATGTTAGTGTATAAATGTGCAGCTCATTTACTAATGAAATGTGTCGGTAACCAATACAAAAACTTTGTTAGAATTTTTGGCTAAACTAAATTAAGTTAACTCAAAAGGCATAAAATGAAAACTCACTGCTAACCAGGCTCTTAACTTCCCATCTTATTAGGACTTAGAAGACTTTCCTTGCTCTGGGTTCAAGATGTGGACATCCCTTACAGAAAGCTAGGCAGCTCTctgttctttcattttaaacaaagtAAAGAAATTCCTGAAAAGCTCTACATCATTTACAGACCCAATTTGGTCATGTAAAATATTGTGCATTTTTTAGACAATTTATTGCCTGCCATCCTTCCCTTCCACCAGCGTTCCGTCATTCAGAAGTtggtcttctattttttttctttttgacgtACTTCATCCAGTCCAATTGACTGTTTCCAGGGCTATTTTCAGAAACTAagaatgagaatgagagagcAAAAGGCTATTTTCTTTCCTGGAGCTATTTTGGGTCATGAGGGGCAGCCCTGTAGGCCTCTGTGCAGTTCCCACAGTCTGCTGTTCTTCATGTTCTTCATCCTCAAACATTCTCCCCGAACTACCAGACAGGTCTGCTGTCACTGAAACCCACCAGACACACATGAAGAGCTGCTAATTATGTCAGAGAGTGTGAGTCATGCAACCCTGCACTAATTAGGTGAGTTTAGGAAACCTAATTACACAGTGTAGCTCTTTGAGATCAGTGGCTGAATaggaagaaataaagaaaaaagttcacATCAGTcaaaaaacatggtaaagtTACAGTATTAGTACTAttgcatcttaaaaaatttaatatcattgaaaagttactttatttcagtgattcagttcaaaatgtaaaactcatattatatagatgtattaaacacagagtgatctattttaagcatttgtttattttattgttgatgattatggcttacagtcaatgaaaactcaaaaatcaacagatgacatgactctccaaaccatcactgattgtggaaacttcactctagacctcaagcaaCTTGGACTGTCTCTTCACTctttctccagactctggtcccttgatttacaaatgaaatgcaaaatttactgatggtcagtgatgtattggagagccatgtcatctgctggtgttgatccactgtgttatatcaagtccaaagtcattgcagtgttttccacgaaaatcttacagcgcttcatgcttccctctgctgacaacttttatagagatgtagatttaattttccagccggacttggcacactgtcaaAACTAcaagttggtcttatataatatataatacacacacacaatttctcattgtttttcttgggtgtgtgtgtgtgtgtgtgtttacacactAATGAACATCAATATTTTAGCCAGGTGCAGAGTGAACTGTTGCATATGAAGAAAAATGTACACATCATCtaaactattattaattaaaagtgtATatgtttaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113147 lncRNA upstream 378375 27923069 ~ 27923358 (+) True G84001
XR_002650374.1 lncRNA upstream 455767 27832050 ~ 27845966 (+) True LOC111193235
TU113132 lncRNA upstream 469487 27831977 ~ 27832246 (+) False LOC111193235
TU113131 lncRNA upstream 470149 27829449 ~ 27831584 (+) True LOC103044189
TU113127 lncRNA upstream 479522 27820870 ~ 27822211 (+) False fam98b
TU113440 lncRNA downstream 12959 28373948 ~ 28374517 (+) True G84219
TU113497 lncRNA downstream 226407 28587396 ~ 28587954 (+) True G84264
TU113516 lncRNA downstream 344904 28705893 ~ 28723051 (+) True G84280
TU113518 lncRNA downstream 355091 28716080 ~ 28723051 (+) False G84280
TU113538 lncRNA downstream 409179 28770168 ~ 28772835 (+) True G84291
XM_007257344.2 mRNA upstream 36406 28182427 ~ 28265327 (+) True ttll5
XM_007257345.2 mRNA upstream 36406 28182427 ~ 28265327 (+) False ttll5
XM_007257346.2 mRNA upstream 36406 28182427 ~ 28265327 (+) False ttll5
XM_007257350.3 mRNA upstream 124029 28158803 ~ 28177704 (+) True flvcr2
XM_007257349.3 mRNA upstream 124034 28152935 ~ 28177699 (+) False flvcr2
XM_007257332.3 mRNA downstream 14548 28375537 ~ 28417805 (+) True gpatch2l
XM_022673105.1 mRNA downstream 67957 28428946 ~ 28560094 (+) True esrrb
XM_022673107.1 mRNA downstream 67957 28428946 ~ 28560094 (+) False esrrb
XM_022673106.1 mRNA downstream 67957 28428946 ~ 28560094 (+) False esrrb
XM_015607900.2 mRNA downstream 67957 28428946 ~ 28560094 (+) False esrrb
TU113122 other upstream 482186 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 1553982 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 1553982 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 1793608 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 1902466 26392890 ~ 26399267 (+) False spata7
TU113547 other downstream 609275 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 609290 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 638513 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 643105 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 679990 29040979 ~ 29041607 (+) True LOC111193240

Expression Profile