RNA id: TU113440


Basic Information

Item Value
RNA id TU113440
length 570
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G84219
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28373948 ~ 28374517 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttgtgtcacgtctggtgctgttagctcctctgtcccttccacacccagctctaacggaggttctcaggttaacaactacactacccagaatgcaccacccgctgacatcacgcactcacctgatcacgtgacacctcacctgcttccaccaggaagccccgaatactgattactggcactataaaggtgcacgccaaacagacttcatcgccgcgtattgtaggttatcctcgtacaaagcgttacttatctcttgtctcagttactttgtgtatgaccttgcttttgtttactcgacgccgattcttgcctctgcctttgatattggattgtttgtgtatgacctggactgtgctttcactactgcctcttggattacctctgatactggattgcttgtgtatgaactctggactgtctctcgtttatggtatggttttgtcttcattgctctgtctactggtgatcacccttatttttgtatcgaccctgatttcatctgtttattatcataataaacacattttgtttttatcagtatctgcgcttgtctgctattctgttctgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113373 lncRNA upstream 12959 28301733 ~ 28360989 (+) True G84164
XR_002650284.1 lncRNA upstream 42540 28328775 ~ 28331408 (+) True LOC111193142
TU113147 lncRNA upstream 450590 27923069 ~ 27923358 (+) True G84001
XR_002650374.1 lncRNA upstream 527982 27832050 ~ 27845966 (+) True LOC111193235
TU113132 lncRNA upstream 541702 27831977 ~ 27832246 (+) False LOC111193235
TU113497 lncRNA downstream 212879 28587396 ~ 28587954 (+) True G84264
TU113516 lncRNA downstream 331376 28705893 ~ 28723051 (+) True G84280
TU113518 lncRNA downstream 341563 28716080 ~ 28723051 (+) False G84280
TU113538 lncRNA downstream 395651 28770168 ~ 28772835 (+) True G84291
TU113542 lncRNA downstream 428597 28803114 ~ 28803321 (+) True G84294
XM_022673103.1 mRNA upstream 17139 28355574 ~ 28356809 (+) True LOC111193237
XM_007257342.3 mRNA upstream 53456 28297960 ~ 28320492 (+) True ift43
XM_007257343.3 mRNA upstream 53456 28297960 ~ 28320492 (+) False ift43
XM_007257344.2 mRNA upstream 108621 28182427 ~ 28265327 (+) True ttll5
XM_007257332.3 mRNA downstream 1020 28375537 ~ 28417805 (+) True gpatch2l
XM_022673105.1 mRNA downstream 54429 28428946 ~ 28560094 (+) True esrrb
XM_022673107.1 mRNA downstream 54429 28428946 ~ 28560094 (+) False esrrb
XM_022673106.1 mRNA downstream 54429 28428946 ~ 28560094 (+) False esrrb
XM_015607900.2 mRNA downstream 54429 28428946 ~ 28560094 (+) False esrrb
TU113122 other upstream 554401 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 1626197 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 1626197 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 1865823 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 1974681 26392890 ~ 26399267 (+) False spata7
TU113547 other downstream 595747 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 595762 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 624985 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 629577 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 666462 29040979 ~ 29041607 (+) True LOC111193240

Expression Profile