RNA id: TU113542


Basic Information

Item Value
RNA id TU113542
length 208
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G84294
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28803114 ~ 28803321 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTTTAGTATCTTGCTTACATACCTGGTTGGTCTGGGGGGatttcatgtcagtgtagtttaatctgatttatatatatctggtatccaaatacctggatgttgtggcgggtatttcatgttagtttagtttaatctgatttatatatatctggtatccaaatacctggatgttgtggcgggtatttcatgtcagtgcagtttaacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113538 lncRNA upstream 30279 28770168 ~ 28772835 (+) True G84291
TU113516 lncRNA upstream 80063 28705893 ~ 28723051 (+) True G84280
TU113518 lncRNA upstream 80063 28716080 ~ 28723051 (+) False G84280
TU113497 lncRNA upstream 215160 28587396 ~ 28587954 (+) True G84264
TU113440 lncRNA upstream 428597 28373948 ~ 28374517 (+) True G84219
TU113544 lncRNA downstream 20503 28823824 ~ 28825276 (+) True G84296
TU113546 lncRNA downstream 122289 28925610 ~ 28926176 (+) True G84298
TU113548 lncRNA downstream 176152 28979473 ~ 28979778 (+) True G84300
TU113560 lncRNA downstream 196388 28999709 ~ 29009835 (+) True LOC103045392
TU113565 lncRNA downstream 209270 29012591 ~ 29018336 (+) True G84307
XM_007257310.3 mRNA upstream 1875 28775149 ~ 28801239 (+) True arel1
XM_007257327.2 mRNA upstream 54686 28739241 ~ 28748428 (+) True LOC103029222
XM_015607893.2 mRNA upstream 127451 28662092 ~ 28675663 (+) True dlst
XM_007257340.3 mRNA upstream 243020 28484727 ~ 28560094 (+) False esrrb
XM_022672486.1 mRNA downstream 50962 28854283 ~ 28969028 (+) True LOC111193134
XM_022673123.1 mRNA downstream 384254 29187575 ~ 29215673 (+) True adi1
XM_007257305.2 mRNA downstream 461732 29265053 ~ 29324443 (+) True eipr1
XM_022673125.1 mRNA downstream 611191 29414512 ~ 29625594 (+) False LOC103038403
XM_022673128.1 mRNA downstream 630505 29433826 ~ 29610931 (+) False LOC103038403
TU113122 other upstream 983567 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 2055363 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 2055363 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 2294989 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 2403847 26392890 ~ 26399267 (+) False spata7
TU113547 other downstream 166943 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 166958 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 196181 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 200773 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 237658 29040979 ~ 29041607 (+) True LOC111193240

Expression Profile