RNA id: TU113544


Basic Information

Item Value
RNA id TU113544
length 1453
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G84296
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28823824 ~ 28825276 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTTGGCTCCGCATGCAGACTGCAACCCAACGCCGGTACCTCCATTTTCACTAACTACACTACACCTAACCCCCGTCTGAACGAACTAATCCTCCAAGCACAACAAACCATCCTTTCAGCCGTTTCCCCACAGACACTCTCTACTTACTGGTCAAGCTGGAAAGCATACAAAAATTTCCACTCCACACATAATATATCTTTCCCTTCTCATCATCCATCCGTTATAGCAGCTTATATTACTTTCATTCACACTCAACATTCAGCCCGTTCCTCATCACTCAGAGTCCATCTGGCAGCTATCAATTTTTTCACTAAACTAATCACTGGCTTACCACACCCTTCCTCTAATCACCCTCAAATTTCCCTCCTCCTGAAAGGaatccaaaaatcagaaacTCCATCCTCACACGAACGAGCTCCCATCTCACCAGAAATCCTCCATCGTTGCATTCAAACCCTCCGATCAGGCTTTTACCCTCCGACAACATCCTCCACGCTCCAATCGCTATTTCTCCTGGCATACTTCGGATTCCTCAGATGCTCAgaattcacttcacttaaaatcTCCCACAACTCCTTTTCATACCCCCTCATATCAGATCTCAGCATCCTGGACTCGGATACTCTCACCTTTAAAATCAAGCGAAGCAAAACTGACCAACTTGGCAAAACCACGATCCTCCATCTGTTTAAACTTGACTCACCCCTCAGCCCGTACGAACCACTCGTCCACCACCTAAATCTCCGGCTCTCTCAACAAGCATCACCTTCAGATCCTCTGTTCACTACGGAATCTGGTAGTATTATCACAAGGCACTGGTTCCACACACATTTCCGCCGCATCCTTTCAGTCAACGGTTACTCACCAGACCAATTCTCCGCCCACTCATTCCGCATCGGTGCAGCATCCAACGCCTCCAGACAAGGAATCCCCGAGCACGTCATCAAGCTTCTCGGACGGTGGTCTTCTCAGGCGTACCACTTATACATCCGTTCCAAACCAGACGATTTGAGACAGGCTCATCTCAAACTAGCTTCATTATAAGCTCCATAttttggggatataactgcacgcttcttcagcacgcagttcagaactccagcccaaatttccccgagttccctcccctttttcttcctcctttttctATGACGACGCAGCTTCCAGCCCTTCTGATGTTCAGCTGTTCACTGATGCTGCGCCTTCCTCTGGTTTCGGCGGCTATTACGGCGGACGCTGGTTCGCCTCTGCCTGGCCGAAGCAATTCGTCCGCTCCGCTGCGCACCTGCGCGATTCTTCTGCGCTCTGGGAGATTTATCCTATAGTCGTCGCTGCCCTCCTTTGGGGACATGAATGGTCAGGAAAATCAATTTTACTCCATTCAGACAATCTCGCCGCGGTCCACATCATCAACAAAAGTCGATCAAAATCGCTAgaaataatgccttttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113542 lncRNA upstream 20503 28803114 ~ 28803321 (+) True G84294
TU113538 lncRNA upstream 50989 28770168 ~ 28772835 (+) True G84291
TU113516 lncRNA upstream 100773 28705893 ~ 28723051 (+) True G84280
TU113518 lncRNA upstream 100773 28716080 ~ 28723051 (+) False G84280
TU113497 lncRNA upstream 235870 28587396 ~ 28587954 (+) True G84264
TU113546 lncRNA downstream 100334 28925610 ~ 28926176 (+) True G84298
TU113548 lncRNA downstream 154197 28979473 ~ 28979778 (+) True G84300
TU113560 lncRNA downstream 174433 28999709 ~ 29009835 (+) True LOC103045392
TU113565 lncRNA downstream 187315 29012591 ~ 29018336 (+) True G84307
TU113567 lncRNA downstream 189741 29015017 ~ 29015457 (+) True G84308
XM_007257310.3 mRNA upstream 22585 28775149 ~ 28801239 (+) True arel1
XM_007257327.2 mRNA upstream 75396 28739241 ~ 28748428 (+) True LOC103029222
XM_015607893.2 mRNA upstream 148161 28662092 ~ 28675663 (+) True dlst
XM_007257334.3 mRNA upstream 263730 28489979 ~ 28560094 (+) False esrrb
XM_022672486.1 mRNA downstream 29007 28854283 ~ 28969028 (+) True LOC111193134
XM_022673123.1 mRNA downstream 362299 29187575 ~ 29215673 (+) True adi1
XM_007257305.2 mRNA downstream 439777 29265053 ~ 29324443 (+) True eipr1
XM_022673125.1 mRNA downstream 589236 29414512 ~ 29625594 (+) False LOC103038403
XM_022673128.1 mRNA downstream 608550 29433826 ~ 29610931 (+) False LOC103038403
TU113122 other upstream 1004277 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 2076073 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 2076073 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 2315699 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 2424557 26392890 ~ 26399267 (+) False spata7
TU113547 other downstream 144988 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 145003 28970279 ~ 28970839 (+) False LOC107197841
LOC103045392 other downstream 174226 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 178818 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 215703 29040979 ~ 29041607 (+) True LOC111193240

Expression Profile