RNA id: TU113548


Basic Information

Item Value
RNA id TU113548
length 306
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G84300
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28979473 ~ 28979778 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaagcaaaggtagctagttaaattaaagctaggctggctagttaaaataaagctaagctagctagttaaattaaagctaggctggttagttaaaataaagctaagctagctagttacattaaagctaggctggctagttaaaataaagctaagctagctagttacattaaagctaggctggctagttaaattaaagcaaaggtagctagttaacttaaagctaagctagctagttacattaaagctaggctggctagttaaattaaagcaaaggtagctagttaacttaaagctaggttagctagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113546 lncRNA upstream 53297 28925610 ~ 28926176 (+) True G84298
TU113544 lncRNA upstream 154197 28823824 ~ 28825276 (+) True G84296
TU113542 lncRNA upstream 176152 28803114 ~ 28803321 (+) True G84294
TU113538 lncRNA upstream 206638 28770168 ~ 28772835 (+) True G84291
TU113516 lncRNA upstream 256422 28705893 ~ 28723051 (+) True G84280
TU113560 lncRNA downstream 19931 28999709 ~ 29009835 (+) True LOC103045392
TU113565 lncRNA downstream 32813 29012591 ~ 29018336 (+) True G84307
TU113567 lncRNA downstream 35239 29015017 ~ 29015457 (+) True G84308
TU113578 lncRNA downstream 47510 29027288 ~ 29027823 (+) True G84313
TU113571 lncRNA downstream 66965 29046743 ~ 29071659 (+) True G84311
XM_022672486.1 mRNA upstream 10445 28854283 ~ 28969028 (+) True LOC111193134
XM_007257310.3 mRNA upstream 178234 28775149 ~ 28801239 (+) True arel1
XM_007257327.2 mRNA upstream 231045 28739241 ~ 28748428 (+) True LOC103029222
XM_015607893.2 mRNA upstream 303810 28662092 ~ 28675663 (+) True dlst
XM_007257334.3 mRNA upstream 419379 28489979 ~ 28560094 (+) False esrrb
XM_022673123.1 mRNA downstream 207797 29187575 ~ 29215673 (+) True adi1
XM_007257305.2 mRNA downstream 285275 29265053 ~ 29324443 (+) True eipr1
XM_022673125.1 mRNA downstream 434734 29414512 ~ 29625594 (+) False LOC103038403
XM_022673128.1 mRNA downstream 454048 29433826 ~ 29610931 (+) False LOC103038403
XM_022673129.1 mRNA downstream 454048 29433826 ~ 29610931 (+) False LOC103038403
LOC107197841 other upstream 8634 28970279 ~ 28970839 (+) False LOC107197841
TU113547 other upstream 8646 28970264 ~ 28970827 (+) True LOC107197841
TU113122 other upstream 1159926 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 2231722 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 2231722 26727908 ~ 26747751 (+) False fermt2
LOC103045392 other downstream 19724 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 24316 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 61201 29040979 ~ 29041607 (+) True LOC111193240
LOC111193135 other downstream 63439 29043217 ~ 29043739 (+) True LOC111193135
LOC107197844 other downstream 92113 29071891 ~ 29078898 (+) True LOC107197844

Expression Profile