RNA id: TU113575


Basic Information

Item Value
RNA id TU113575
length 2459
lncRNA type inter_gene
GC content 0.40
exon number 6
gene id G84311
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29046743 ~ 29071659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGATACTGTAACCTCTCTTCTCTTTGATCATCACTGGAGGAGGATGTAGGTGGGGTTCTTCTTAtgtcacacacactttttttgggtggtaagacacacacacacacacacacacacacacacacctgcctgATTTCTCAGTACTCACCGAAATAGCAACATTCAGTTTAGATTAAGTGCTGCTAAACACCTGACTAAATTACAAAATAGTGTGCGGAGAGAACGATGAGAAACGGAGATAAAGCGCGGTGGGGGGAGGACGGaagcaCAACTTCCAATATCCAATATCTATGGTGCTTAATGGAATACTATGAGGACCTGAGGCCTATTTCGACGCACTGATTAACAATGTGACACTGGAACTCAAGCTTACTTTGGAGCAGGAACCAAACTAACTGTTTTAGATCCAGACCCTAATAAAATCACTAAACCCAAGGAACTGAAAGtcaagttactgaatcattcatcaGAGGAAGAGTGTACGGAGAAACGGGTCACTCTGGTCTGCCTGGCTGAAGAATTTTTACCCTGACCACATCGATCTGGCCTGGTATATAGATGATAAAGAAGAATCCACAGGAGTTGCAAAAGATGATTCTGCTAAACTAAATACTGACAATACATACAGCATCTCCAGCAGACTGAGCATCCCCTTTAAAAAGTGGAATCAAGGCAATACATACACATGCGCTTAAGCTCACCTTCTACTACCCAAACAAGACCAGCGATGGCACATATAAAGCTGATCCTGTGACAAAACTGGAATCTTTAACAGCACCAAAACgGGACAACCCTTCAGACAAAGCAGataaATACACCAGACAGGGAAGAACCACAATGGTGGCCTATGGTTTGTTCATTGCCTAAAAGTGTCCTGTACGGCCTTTTCGTCATCGTGATCGTGAGACGACAGCGTTTCGTTTCGAAGTAAAGGAGTTCGGACTGGAGTGATCCGGAGTGATCCAGGACAGAAGAGGACCCAGTGTTAGCATCACGTTAACACAAACCTTGTGTATAAAGGCCTGCTTATTATATactgcttgttttttattacattatactaATGTTATTTGTCAGCAGCTTTATGTCCAAATATACTTGTACACTTTTAAAACTGAAGATgctttaggagttcagaaaagCTCAGCAGGATCGTAAGTCTGGGTTTGAGAGAggaaaattggccttgctttctctctagGTGGGTATAAGGTGTTCTCTCCTCCAATCACACCAGGGGTCCTATCGTAAACCCTGCACAAGGACCATCACGATAGCTatactgatgggcgtggtggtctggaagtgaggtgtgttcaggtaaatttctggtgtgttgatGTTTTTTAAGGAATAAAATTACATAGTTGTTCCCATAATTTAGCTGCTGGCATATCTTCACAGCATTAACGTGCAGCTCAGTATCCTCTGTATCCTCGCACAGGTTTGTCTTAAAGGGAACGGCAagtgaaacactgattggttaatttcacgatacgcccaaaacacacccatgattaattaagagaattagttcatgccttttgcacatttctaaGTGctcaaggcatatttttttgcactctcacgataccaaagacacaccgacacgccttAAATCCAGCTACATAATCCACAGTTGactggtgcactatagatcgctaaaatagggccctatggGTTTGATGTTGGCTGGCACAGTCATCTATTAGCTAATGTATTGGAGCTGGGGATCCAGCGCTTTCCTCTGTGTTGGTTGGCTACTTAGTGATACTGCCCtggcagcagttcaaaaaaaggGGTGGAGGCtttaacttcacatgtatcggaggaggcatgagcTTTTCATGACCCTTTTAGTGTCTGGAGCATTGTAAGTGGGTGAGTAATAAGTAATTGGCTTTAGCAAATTGGAGAAAAAATTGGCTAAATAAAAGTTCAtgaaaaattgataaaaaaaagtggttCTTGAAATATTTCTATTAGGAaccatgttttaaataaaaatgtctgtGAAGCATTTGTGAGTCTAAAGAAAAGAATCCTTATGTGatataaaggttttattttattttacttttaacaaaTTTAAAGATTCTTCACATTCAAATCTTGATATTGGTTGATATTGAAAGcaacttcattttttaaagtgtacgCCTTGTTTGTTGTATAATGTTAACATAGATATTAATACATGTTACtgtctgtaaaaacaaaaaaaaaaaaatctaaacttctGCAACCAGTAGTTACTGGCTTATGTTCCCCACTGGCATAACTTGGGAACAATTCAACAACAGCCAGTTTGCATTGCTTTTTGCACGTGTACAGTTAGCAATCTGTTAATACGTTTTAATATAAGTCATAGGGCAAAAGGGGTTGATGAGGGGTTAatgtatcaaatcaaatcatttaTCATACAAAAAATGCTAGATTTAAAATGTCAACATtggaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113578 lncRNA upstream 18920 29027288 ~ 29027823 (+) True G84313
TU113565 lncRNA upstream 28407 29012591 ~ 29018336 (+) True G84307
TU113567 lncRNA upstream 31286 29015017 ~ 29015457 (+) True G84308
TU113560 lncRNA upstream 36908 28999709 ~ 29009835 (+) True LOC103045392
TU113548 lncRNA upstream 66965 28979473 ~ 28979778 (+) True G84300
TU113577 lncRNA downstream 5457 29077116 ~ 29078836 (+) False LOC107197844
TU113690 lncRNA downstream 32072 29103731 ~ 29103978 (+) True G84402
TU113691 lncRNA downstream 38953 29110612 ~ 29112649 (+) True G84403
TU113700 lncRNA downstream 88735 29160394 ~ 29162367 (+) True G84412
TU113702 lncRNA downstream 101147 29172806 ~ 29175987 (+) True G84414
XM_022672486.1 mRNA upstream 77715 28854283 ~ 28969028 (+) True LOC111193134
XM_007257310.3 mRNA upstream 245504 28775149 ~ 28801239 (+) True arel1
XM_007257327.2 mRNA upstream 298315 28739241 ~ 28748428 (+) True LOC103029222
XM_015607893.2 mRNA upstream 371080 28662092 ~ 28675663 (+) True dlst
XM_007257335.3 mRNA upstream 486649 28489979 ~ 28560094 (+) False esrrb
XM_022673123.1 mRNA downstream 115916 29187575 ~ 29215673 (+) True adi1
XM_007257305.2 mRNA downstream 193394 29265053 ~ 29324443 (+) True eipr1
XM_022673125.1 mRNA downstream 342853 29414512 ~ 29625594 (+) False LOC103038403
XM_022673128.1 mRNA downstream 362167 29433826 ~ 29610931 (+) False LOC103038403
XM_022673129.1 mRNA downstream 362167 29433826 ~ 29610931 (+) False LOC103038403
LOC111193135 other upstream 3004 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 5136 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 21629 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 46637 28999502 ~ 29000106 (+) False LOC103045392
LOC107197841 other upstream 75904 28970279 ~ 28970839 (+) False LOC107197841
LOC107197844 other downstream 232 29071891 ~ 29078898 (+) True LOC107197844
XR_002650381.1 other downstream 2383325 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 2751927 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 3127524 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 3127524 32199183 ~ 32215147 (+) False LOC103035447

Expression Profile