RNA id: XM_015607907.2


Basic Information

Item Value
RNA id XM_015607907.2
length 2745
RNA type mRNA
GC content 0.51
exon number 1
gene id LOC103025336
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29967550 ~ 30015180 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGAAATCCTGAGAACTGAACAGTGAGAGGCTGAGGTGGTGAGCTGCTGTGTCTGAAGTGAGAGGAGCTACTTTATAAGCTGGAGATCCTGAATAAGCTACACAGTCTCAGCTGGAGATACTGAAGAAGCAACACAGCCTCAGCCTGGACAGTTTTCTAGCTGTGTATTTCATTTGATCCTGTTTTAATAAGGATTTTCAGAGTTTTAATCCGTGCGTAAAAGCAGCGAGGACACACCGAGCACATGGCTGCTATCCGTAAGaagctggtggtggtgggggacGGGGCGTGCGGTAAGACGTGTCTGCTCATCGTCTTCAGCAAGGATGAGTTCCCTGAGGTCTACGTGCCCACCGTCTTCGAGAACTACGTGGCTGACATCGAGGTGGACAGCAAGCAGGTGGAGCTGGCGCTGTGGGACACGGCCGGCCAGGAGGACTACGACCGCCTGCGCCCCCTTTCCTATCCGGACACGGACGTGATCCTCATGTGCTTCTCCGTGGACAGCCCGGACTCTCTGGAGAACATCCCGGAGAAGTGGGTGCCTGAGGTCAAGCACTTCTGTCCCAACGTGCCCATCATCTTGGTGGCCAACAAGAAGGATCTGCGCAACGACGAGAGCGTGCGCGGCGAGCTGGCGCGCATGAAGCAGGAGCCGGTGCGCGCTGAGGACGGCCGCGCCATGGCCGTGCGCATCGGTGCCTACGACTACCTGGAGTGCTCGGCTAAGACCAAGGACGGCGTACGGGAGGTGTTTGAGACTGCCACGCGTGCTGCGCTCCAGAAGAGGTCCAGGCCGGCTGGGGGCTGCGCGAACTGCTGCAAGCTCTTGTGAACTTGTGTAAAAACTCATGtaaacttctgtgaaatcatGTGAGCTCCTGTACGAACTCCTACGAGAAGAGGACATGGTTCCCCAGACAAGAAACGTAACATGCTAATGTGGGGCTCACTTAGGTGGAACATGGTCTGGGTGGGTTCCAATTGAGTTCCAGTTGGGTTCCAGGTCGGTTCTAAATGGGcatgggctctgagtgggtttgtaCTTGTGTTCTAACGACTAGTTGGGCTTCCCATTTAGGGGTTCCATCTAGGCcctatatttgtgtgtgtgtgcaaggtACAAACCAGGTGGGGCCCATGTTGACTCCCATGTTTAAACTCCTCCTGGTCCCATCATTGACACTGACTGACTCCATGCCTTGTGGAGCCAACATGGACAAACCCATGGACAGAACTTTCTAAAAGGACCCAGTTGACTTGTTGACCCAGCCTGGAGCCTGGGTCTAGTTCTTTACTCATGGAcaagttggggggggggggggggtgtttggaGAGATGAGGGGGGAGGGGTCTGAAGTGTCCCTTGATGCCCTCCCTGCACAAACACTaaaaagtagagaaagaaggaaaagaatGGACAcagaacagtgagagagagagagagagaggggatggTAGGGGGCTTGTGAACCCCACCCAATCTCaactttgtatctctctctgtgtttgtgtgtctctctatcttgctctctttttttctctcttttgctttgtTGTTTTGGTGCTGTGTGGCAGCCGAAAAAGACACAGGCACTATACTATTCACACTGCAAgtactactaccaccaccaacaacaacaacaacagcatgCTCTGGATAATGCATGCATGGGTGGGTCTGGGTGGTTGGGTAGCTTGGGCACaatatctgctgctgctgctgccacacAGAACAAAGTACAGAACAATGTAACTTATAGGCTTAACACTGTATACAGCCTTGCCTTGTTTATATGACACATGCATAGGgctctgtattttgtttttttggggattttttttaaatgagagaaatgagaagaaaaagaatatgCCTTGCCACTGCATTGAGGTGGTCTTTGGGATGTACACTGGGATGACcctcaaaaaaaagaacaggagGAGACTTGTACAAAATGCTAGCTATCTAGTCAGCTGCCAGCTGTGGTGAGACTGCAGTGCGAGCAGGGCAGCTGTGCTTTTGTTGCACAGTGAGAGACTTGATGCAGCACTAAGAAGGGGGATGGAGGGGTGGGGGATGGGTGCAAGTGGTCAGTCAGTGTGTTCCGGGACTGTGTATTGTGCTGTTGCAAAAGTCACCTCGATTCATTGTATGCACACACATTttcaacacacatacatacgtaCATACATGCCCACACCATGAAATGTTAAAGTGTGGGCCCATGCTGGTGAATCTGCATGCTTAAATAGCCCAGCATTGTCTGAATCTCCGTTTGTTGTTTCCATTCTTGTTGCACTGGGTGCCCGTGCAGTCTGCTACCCCACCCTAGCGCTCGGTAAACTCGTACGCAGCCCCTCTGCTCGAGCACCAACAATGAAGTTTGTCACGATTGCACTGATGGGATTATGGGAGCTGCTTTTGTTGATTTGGGGTGTATAGGGCTCGGCTGGGATTGGCTGGGTTGGGGTGTGGGCCCTTTTCTGCTTTGGCTCAGCTCTGGGTTAGCGTGACACACTACGCACACCCTCTGTTACAGAGGCGGCCTATGAAGTTCAGCTCTGAAGCTCTgtacattttctgttttgttgtttttaggaCTTTTATATGTCTTTAAGCCTGTGGTACCACTGCATTAACTTCAGACTGACCTGGGTCAGCTCTGAGGCGTTGGCTGTCATGTTTACAGTAACCCAgcaatgaacagaaaaaataaaataaatattcaattGCAATACAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07856 RHOB; Ras homolog gene family, member B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113940 lncRNA upstream 51166 29959375 ~ 29961212 (+) True G84597
TU113933 lncRNA upstream 79988 29931960 ~ 29932390 (+) True G84591
TU113884 lncRNA upstream 147544 29859460 ~ 29864834 (+) True G84558
TU113857 lncRNA upstream 265438 29746627 ~ 29746940 (+) True G84535
TU113856 lncRNA upstream 269891 29742027 ~ 29742487 (+) True G84534
TU113968 lncRNA downstream 55835 30070957 ~ 30072897 (+) True G84623
TU114049 lncRNA downstream 170761 30185883 ~ 30243942 (+) True G84685
TU114051 lncRNA downstream 170761 30185883 ~ 30243942 (+) False G84685
TU114058 lncRNA downstream 204016 30219138 ~ 30224378 (+) True G84691
TU114059 lncRNA downstream 232334 30247456 ~ 30248237 (+) True G84692
XM_022673137.1 mRNA upstream 3450 29989786 ~ 30008928 (+) False LOC103038716
XM_022673136.1 mRNA upstream 3450 29995371 ~ 30008928 (+) False LOC103038716
XM_022673135.1 mRNA upstream 3450 29998841 ~ 30008928 (+) True LOC103038716
XM_022673134.1 mRNA upstream 3450 30003478 ~ 30008928 (+) False LOC103038716
XM_007257318.3 mRNA upstream 159113 29847628 ~ 29853265 (+) True odc1
XM_022673138.1 mRNA downstream 133137 30148259 ~ 30173142 (+) True pask
XM_022673140.1 mRNA downstream 133137 30148259 ~ 30173142 (+) False pask
XM_022673139.1 mRNA downstream 133137 30148259 ~ 30173142 (+) False pask
XM_022673141.1 mRNA downstream 133137 30148259 ~ 30168758 (+) False pask
XM_007236376.3 mRNA downstream 158464 30173586 ~ 30179026 (+) True mterf4
LOC107197844 other upstream 933480 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 968639 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 970771 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 987264 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 1012272 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 1439862 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 1808464 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 2184061 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 2184061 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 2184769 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile