RNA id: TU114049


Basic Information

Item Value
RNA id TU114049
length 1291
lncRNA type read_through
GC content 0.38
exon number 2
gene id G84685
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30185883 ~ 30243942 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTtctgaggtggtccaaaggtattcggtctattatataatatctaaggagcttattttttccaccatattttacagtttgtcttataacaagtacattgttcacaaaaaatagtcatttagatattttagatatgtacatttgaaatttaagtggtgagacaggaaatgtaccaaaatcctggaaagtcccatttacagtgttttaaggtGCTTTAATCCATTGTCCTTTAACAGCTTTAGTTGATTTTACAATAGTGATAGACCAACTAGTGACCTTTTATGCTGAATTTGTTAAAATTGTTGTTTAGCTTCTCTTTTTGCTAAGTTTGAATCCTGGGTTATGctgcttctgcatcagcagccagagtccgagagagagcacaattgacaaTACTCTCCctaggtgggtacagtagatggcactctttcccccaTTATTTCCCAGTCAAGTCATCAGTGTGATGCTAGTCAACACAGGCATCTGTTGTAAAGCTGTAAATCTGGCACTTTCCTGCTTGGGTTCAATGGGACTCATTTCTGGCCACTATAGAGCGCTCCAGCTTTTTGCTTCCATGCATATCTGGGGGCTTTTTGAAGTTAGAAatgtttgggtcattgtcctgctggaagaccctTGACCTAGGATGCAAACTCAGCTTTCTGACACTGTGCTCTACATTGTGACCCAAAATCTTCTTTGGTAATGTTCAGATTTCATGCTGCCTTGCACACAGTCAAGGCAACCAGTGCCAGAGGCAGCAAAACGGCCCCAAAAAATATTTGAACCTCCAACACATTTGACTGTAGGTactttgttcttttctttgtaggCCTCATTGCATTTTTGGAAAACAGTAGAATGATGAGCTTGAATGATACCAAGAAGCTCTATCTTGGTCTCATCTGTCCAAAAGTTGCAAGTTATGAGGAACGAAGACTAAACAACAAATGTAAATCAATAGCTGATTCTTTAATGTACAATAAGCAACTACGGGTTCAATACAATGTACAACATTTTACATTCATATTTGTTTCTAAAAGCAAAGCAACAAAATCTTTACCTCCGCCTGTAGGAGAGAGTGGGATTTCAACGAGTATTCATGTGAAACCTTTTGAATGGCAGGATCCTTTTACGTTACTGTATACgctgtatgtacagtacatacacaTAGTATACACACTAGTGCATGCAAGAATgaactgtttttaatgttttattgtgtttttgtattcTTTTAGCAATGCATTTCTGTATATTGCTTGCGGAGCTGTTGTTAGTAAAGTctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113968 lncRNA upstream 112986 30070957 ~ 30072897 (+) True G84623
TU113939 lncRNA upstream 170703 29967550 ~ 30015180 (+) False LOC103025336
TU113940 lncRNA upstream 224671 29959375 ~ 29961212 (+) True G84597
TU113933 lncRNA upstream 253493 29931960 ~ 29932390 (+) True G84591
TU113884 lncRNA upstream 321049 29859460 ~ 29864834 (+) True G84558
TU114059 lncRNA downstream 3514 30247456 ~ 30248237 (+) True G84692
TU114060 lncRNA downstream 5084 30249026 ~ 30249482 (+) True G84693
TU114061 lncRNA downstream 5600 30249542 ~ 30249865 (+) True G84694
TU114063 lncRNA downstream 5950 30249892 ~ 30253283 (+) True G84695
TU114065 lncRNA downstream 68064 30312006 ~ 30331109 (+) True G84697
XM_007236377.3 mRNA upstream 1071 30180920 ~ 30184812 (+) True LOC103030290
XM_007236376.3 mRNA upstream 6857 30173586 ~ 30179026 (+) True mterf4
XM_022673138.1 mRNA upstream 12741 30148259 ~ 30173142 (+) True pask
XM_022673140.1 mRNA upstream 12741 30148259 ~ 30173142 (+) False pask
XM_022673139.1 mRNA upstream 12741 30148259 ~ 30173142 (+) False pask
XM_022673143.1 mRNA downstream 13850 30257792 ~ 30327152 (+) True yeats2
XM_022673144.1 mRNA downstream 13850 30257792 ~ 30327152 (+) False yeats2
XM_022673148.1 mRNA downstream 181768 30425710 ~ 30563794 (+) True LOC103031349
XM_007231619.2 mRNA downstream 362815 30606757 ~ 30615062 (+) True alg3
XM_022672497.1 mRNA downstream 383905 30627847 ~ 30631632 (+) True LOC111193145
LOC107197844 other upstream 1106985 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 1142144 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 1144276 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 1160769 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 1185777 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 1211042 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 1579644 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 1955241 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 1955241 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 1955949 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile