RNA id: TU114059


Basic Information

Item Value
RNA id TU114059
length 782
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G84692
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30247456 ~ 30248237 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atttatatagcgctttttacaacaaaggttgtcacaaagccgctttacaggaaaaacaggtccacgcctcttatgagcagcaccacagagatgccaattttatggtgacacagtggcaaggaaaaactccctttaagaggaagaaaccttggaaggaaccaagactcagtccgaggaacccatcctactcgggttgacccgctcagtacaaacaaacaacaaacaacaaacaaataacagaacaaaaacagtacagagaattaatgtgaactatggctaatataacaggtactaatttatgaatataagaatgtgatgggcacaaactatagagctatggctaatacagaaacagatactgagtgtgttaatgttaatcagtgcagggctgcagagccggagaacaacacagcgggcagtggagagccaggctgggaacatcaggaacagggcatctccatacatgtaaaagagatagatagagaaaacagaaaggaaaggaagagagaaaaaaaaagcagaagttagaagggttgtgaaataattctgatgagtagaaggacagggctgattcctgaaagctggaaccacagacggacacatccaggaagaccggccggccaggcgtctcagcacatgtgagaaagatagagagagagaacagagaggggagggaagagaaaggggttagaatggttttataaaactctgctggagtgggatgggcactggtagcagcagctcaggacatggggagagaaagagaaagcagatgattagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114049 lncRNA upstream 3514 30185883 ~ 30243942 (+) True G84685
TU114051 lncRNA upstream 3514 30185883 ~ 30243942 (+) False G84685
TU114058 lncRNA upstream 23078 30219138 ~ 30224378 (+) True G84691
TU113968 lncRNA upstream 174559 30070957 ~ 30072897 (+) True G84623
TU113939 lncRNA upstream 232276 29967550 ~ 30015180 (+) False LOC103025336
TU114060 lncRNA downstream 789 30249026 ~ 30249482 (+) True G84693
TU114061 lncRNA downstream 1305 30249542 ~ 30249865 (+) True G84694
TU114063 lncRNA downstream 1655 30249892 ~ 30253283 (+) True G84695
TU114065 lncRNA downstream 63769 30312006 ~ 30331109 (+) True G84697
TU114080 lncRNA downstream 118940 30367177 ~ 30367953 (+) True G84711
XM_007236375.3 mRNA upstream 8931 30196717 ~ 30238525 (+) True LOC103029649
XM_007236380.2 mRNA upstream 57286 30189061 ~ 30190170 (+) True LOC103031974
XM_007236377.3 mRNA upstream 62644 30180920 ~ 30184812 (+) True LOC103030290
XM_007236376.3 mRNA upstream 68430 30173586 ~ 30179026 (+) True mterf4
XM_022673139.1 mRNA upstream 74314 30148259 ~ 30173142 (+) False pask
XM_022673143.1 mRNA downstream 9555 30257792 ~ 30327152 (+) True yeats2
XM_022673144.1 mRNA downstream 9555 30257792 ~ 30327152 (+) False yeats2
XM_022673148.1 mRNA downstream 177473 30425710 ~ 30563794 (+) True LOC103031349
XM_007231619.2 mRNA downstream 358520 30606757 ~ 30615062 (+) True alg3
XM_022672497.1 mRNA downstream 379610 30627847 ~ 30631632 (+) True LOC111193145
LOC107197844 other upstream 1168558 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 1203717 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 1205849 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 1222342 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 1247350 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 1206747 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 1575349 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 1950946 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 1950946 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 1951654 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile