RNA id: TU114065


Basic Information

Item Value
RNA id TU114065
length 856
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G84697
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30312006 ~ 30331109 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caaaagcagtgtgcaagactggtggaggagaacatgatgccaagatgcatgaaaactgtgattaaaaaccagggttattccaccaaatattgatttctgaacttttaaaactttataaatctgaatttattttctttgcattattgcaGCAGAACTGATGTGAGAAATTCGATCTCAAGCGCTCTCAGGAGATGCAATTAAAATGCCAGTTGTGAACAACTATTCTTTTTGCAATCATCATTTCTGATTGGTTCCCATAGGTCACATGTTAAtcccaggtgtaaacagggtctaaCTCAGTTATAGATATAAAATtatgaaggaaggaaagaatCTGGGGTGGTAAAAAATGCTTTGTTGACATAGAATCAATGCTATCACGCTAACAGAGGCTAGCGTCCACTGTTTGTCGTCACTGTATTTGACTgagcagttctttttttttttaagttgttgaTCGGCTTTTGATCATCGTATAAAATCCTGTTGTACgttgtattttaattgtatgTCGAGTTTTGTTGGCTACTTAGAGTAAGCAACCAGCAACACATTTAttcagtgtgtgttagtgtgttggaatgtttgtaaaggtgtgtatgtaattattttgagtgtgtatgtgagaatTTTTTCGTGTGCAAGGTTAATTTGCTGCTTGGCAGTCAAGTCGAGTagcgcatgtgtgtgtatgtgtatgtatgtatgagcAAACGTAACTAAACTGTCATTATGCGTTCAAAACAAAATGTAACGTATTGTAGACTGTTCCTGACTATTGTATTTTTCCTTTGTTTAGAGTGTACCTAAAAATGATGCCTATTCTTGTATTAAAATGGTAGTTTTGCCACTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114063 lncRNA upstream 58723 30249892 ~ 30253283 (+) True G84695
TU114061 lncRNA upstream 62141 30249542 ~ 30249865 (+) True G84694
TU114060 lncRNA upstream 62524 30249026 ~ 30249482 (+) True G84693
TU114059 lncRNA upstream 63769 30247456 ~ 30248237 (+) True G84692
TU114051 lncRNA upstream 68064 30185883 ~ 30243942 (+) False G84685
TU114080 lncRNA downstream 36068 30367177 ~ 30367953 (+) True G84711
TU114083 lncRNA downstream 39104 30370213 ~ 30375082 (+) True G84714
TU114097 lncRNA downstream 61231 30392340 ~ 30415593 (+) True G84727
TU114099 lncRNA downstream 65368 30396477 ~ 30412774 (+) True G84729
TU114102 lncRNA downstream 65368 30396477 ~ 30405667 (+) False G84729
XM_007236375.3 mRNA upstream 73481 30196717 ~ 30238525 (+) True LOC103029649
XM_007236380.2 mRNA upstream 121836 30189061 ~ 30190170 (+) True LOC103031974
XM_007236377.3 mRNA upstream 127194 30180920 ~ 30184812 (+) True LOC103030290
XM_007236376.3 mRNA upstream 132980 30173586 ~ 30179026 (+) True mterf4
XM_022673141.1 mRNA upstream 143248 30148259 ~ 30168758 (+) False pask
XM_022673148.1 mRNA downstream 94601 30425710 ~ 30563794 (+) True LOC103031349
XM_007231619.2 mRNA downstream 275648 30606757 ~ 30615062 (+) True alg3
XM_022672497.1 mRNA downstream 296738 30627847 ~ 30631632 (+) True LOC111193145
XM_022672499.1 mRNA downstream 296738 30627847 ~ 30631632 (+) False LOC111193145
XM_022672498.1 mRNA downstream 296738 30627847 ~ 30631632 (+) False LOC111193145
LOC107197844 other upstream 1233108 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 1268267 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 1270399 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 1286892 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 1311900 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 1123875 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 1492477 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 1868074 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 1868074 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 1868782 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile