RNA id: TU114102


Basic Information

Item Value
RNA id TU114102
length 1635
lncRNA type inter_gene
GC content 0.49
exon number 12
gene id G84729
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30396477 ~ 30412774 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTGGTAGTAAaaatttaatagtaaaatattttatttatagttaataAAACATGACCAAAAGTGTCGGCTCAGAAGGTTTAAAAGCATCTAAGACAAAGAtaaaagctattaaaaaaagaaaaacagaataaaagatTAGTGGCGAAGGCGAGTGCGTCGGGTTCGTGCAATGGGCGTGGTCACTTTCGGGGTTTCATTGTCTGCCATCACAGCATcttcatcctcctcctcatcgCTGCTGAAGTTCATGACCTTTTTGGGGCGAGCACGAGTTCGTTTGGGAGTCACTAGGTCACTTTCATCCATCTTAGACTTCACACGACCTCGTGTTTTGCGAGTGCTTTTGGGGGGCTGTGGTGTCTGTGAGTTCTGGCTGGGTGCCTGGTCATCCAGCTGCTGCTCGCTCTCCTCGTTCTCAACATTTTCCAGACCTTTAGTGTGCACTGCAGTCATCTTCTTCTCCAACTCCTCCACCTGAGCCTTAAACTGGGGCTTGGCTCTACGGCGGAGTTTGGCCAAGATAGAGAGCAGAGGCTGGTACACTGCATCTTCAGTGAGTTTATCACTGTAACAGTCCCAGCATTCCTGCAGCTTCTTAAAACCCCGTTCACACATGGAgagcagagacagagacacgGCCAAGTCTGCCCACTGACGCTCCGTCTTGGCCGTTCTGAAACGCTGACAGAGCTTCTCCACCAAACTCTCCGTCTGCCTTTCTTTAGTGATGTAGGAAAAGAGCTGCTTCATAATGGTGTTGAAATCCTCCTCTTTCATGCccctctcaggatctgacaatCGGCTGATAATGTCTGGCAGCAGGTTGTAGATTGCATTGTCCTTTGCAGAGAGCTCGTTGAAGAAATTAAGCGCAAGGCTGGCAATGTGGGGCTCAGAGTCCAATAAGAGTACAGCAACCTCGCTGACCTGACCTTTGACCTTCATAACGTCCTTCAGCACCAGCTGGGTCAGAACCGTGATGGAAGTCAGACGCACTGAAGCGTTTTCATCACACAGTCTGCCATACAGGTTGGGGGTCCATGGCTCCAGAATGTTGGGAAAGCGAACAGTCAGGTCCCCGAGAGCAATGATGGCATTTGCTCTGACAACTGGGAGAGGAGATTTCTCCAACACGGTGAAGAGTAGTCGAATATTGTCCTTACACACTGTCGGACTGATCATCATGTACTGGGAGAGAGCAAGGCATGCAGCAGTGgtgagctgtgtgtgagtgtatctTCCAGGAGAGCTGCACACTTTCACCAGCAGAGGCAGAAACACACTGAGCATGTTTCCATCagctaacagctctgtttcACAAATCTTCCTGATAAACTCTGCCTCTGTGTCCTCTGCTGATGCACCAGTCAAACCAAGCTCATCCTCCACACAGCTGTCATTGGCCTCCTTGTTTTTGCCAGCAGGTCccttttccttctcttctttctcctccTTCTCACCTCTTCTCCTCCGGAGCTCCGTACTCACACTCCTCTCCAGGAGTCGAGCAGATCTTTGAAGAAGGCGAGCACACAGCTGGTCTGGAGTCTCAGCCAGGAAATAGATGAGGCGAATGGCTTGTTCCATGAATGTCTGCCAGTAGGGGTCAGACAAGACGACTCCTGTAAAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114083 lncRNA upstream 21395 30370213 ~ 30375082 (+) True G84714
TU114080 lncRNA upstream 28524 30367177 ~ 30367953 (+) True G84711
TU114065 lncRNA upstream 65368 30312006 ~ 30331109 (+) True G84697
TU114063 lncRNA upstream 143194 30249892 ~ 30253283 (+) True G84695
TU114061 lncRNA upstream 146612 30249542 ~ 30249865 (+) True G84694
TU114104 lncRNA downstream 9113 30414780 ~ 30422454 (+) True G84730
TU114190 lncRNA downstream 59931 30465598 ~ 30513204 (+) True G84795
TU114201 lncRNA downstream 164031 30569698 ~ 30569900 (+) True G84803
TU114204 lncRNA downstream 174389 30580056 ~ 30589023 (+) True G84804
TU114205 lncRNA downstream 177488 30583155 ~ 30583806 (+) True G84805
XM_022673143.1 mRNA upstream 69325 30257792 ~ 30327152 (+) True yeats2
XM_022673144.1 mRNA upstream 69325 30257792 ~ 30327152 (+) False yeats2
XM_007236375.3 mRNA upstream 157952 30196717 ~ 30238525 (+) True LOC103029649
XM_007236380.2 mRNA upstream 206307 30189061 ~ 30190170 (+) True LOC103031974
XM_007236377.3 mRNA upstream 211665 30180920 ~ 30184812 (+) True LOC103030290
XM_022673148.1 mRNA downstream 20043 30425710 ~ 30563794 (+) True LOC103031349
XM_007231619.2 mRNA downstream 201090 30606757 ~ 30615062 (+) True alg3
XM_022672497.1 mRNA downstream 222180 30627847 ~ 30631632 (+) True LOC111193145
XM_022672499.1 mRNA downstream 222180 30627847 ~ 30631632 (+) False LOC111193145
XM_022672498.1 mRNA downstream 222180 30627847 ~ 30631632 (+) False LOC111193145
LOC107197844 other upstream 1317579 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 1352738 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 1354870 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 1371363 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 1396371 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 1049317 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 1417919 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 1793516 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 1793516 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 1794224 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile