RNA id: TU114230


Basic Information

Item Value
RNA id TU114230
length 738
lncRNA type sense_over
GC content 0.46
exon number 2
gene id alg3
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30606757 ~ 30615062 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGATTATAACAGTGCTGTTTACCTCCAACTTCATCGGCATGTGTTTCTGTCGCTCGCTGCACTACCAGTTCTACGTCTGGTATTTCCACACCCTGCCTTACCTGCTTTGGAGTGGCGGGGTGAAGAAGCTCGCCCACCTGCTCAgggTGTTGATACTGGGTCTAATAGAGCTTTCATGGAACACGTACCCCTCCACCAACTACAGCTCTATATCTCTGCATGTCTGCCATCTCATCATCCTGCTTTGTCTGTGGTTTAACCCCAACCCAACACCTCAAACAGAGTCCCAAAACAAAGCCAAACGCCAATGAGCACTGTCCAGCCTGAGCCCTCCCTATACTGTACATCCTGGGCTCTCTATGTCCAACTCCATGTCTGCTCCTACCTGCATTGATGCCACTGCTCTGGACAGACGTGATCCTGCAGGGGGTTCAGCCTGTGACGTCCAGGTTGTCCTAGTGAGCGGCGATGCTGGTTCAGTTGCCAGTGGGAAAGTGCCAGATCTGTGGTGGGGAAAAAACAAAGCTTCTCAGATTTTAAAAGGATAAAAGTGCTGAAGGACTGCTTAAGTCTTGTACTTAAATGGAAAAATGTGAACATATTGTTTTCTCCTGAACATGAACTAGGCCTAGCTGTGGGCTAAATCAAAATGTCAATTGTGATTAACtgataaaaaatgcttttattatcAATGCAGCAGTATGACAATCTCATTATGCAGCTATTATTATGCTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114207 lncRNA upstream 17650 30593633 ~ 30594408 (+) True G84806
TU114204 lncRNA upstream 23035 30580056 ~ 30589023 (+) True G84804
TU114205 lncRNA upstream 28252 30583155 ~ 30583806 (+) True G84805
TU114201 lncRNA upstream 42158 30569698 ~ 30569900 (+) True G84803
TU114190 lncRNA upstream 98854 30465598 ~ 30513204 (+) True G84795
TU114245 lncRNA downstream 72908 30686920 ~ 30689161 (+) True G84831
TU114274 lncRNA downstream 90464 30704476 ~ 30707183 (+) False G84858
TU114276 lncRNA downstream 90464 30704476 ~ 30707183 (+) True G84858
TU114297 lncRNA downstream 156589 30770601 ~ 30771083 (+) True G84870
TU114307 lncRNA downstream 191189 30805201 ~ 30805742 (+) True G84877
XM_022673148.1 mRNA upstream 48264 30425710 ~ 30563794 (+) True LOC103031349
XM_022673143.1 mRNA upstream 284906 30257792 ~ 30327152 (+) True yeats2
XM_022673144.1 mRNA upstream 284906 30257792 ~ 30327152 (+) False yeats2
XM_007236375.3 mRNA upstream 373533 30196717 ~ 30238525 (+) True LOC103029649
XM_007236380.2 mRNA upstream 421888 30189061 ~ 30190170 (+) True LOC103031974
XM_022672497.1 mRNA downstream 13835 30627847 ~ 30631632 (+) True LOC111193145
XM_022672499.1 mRNA downstream 13835 30627847 ~ 30631632 (+) False LOC111193145
XM_022672498.1 mRNA downstream 13835 30627847 ~ 30631632 (+) False LOC111193145
XM_007231620.3 mRNA downstream 99592 30713604 ~ 30746863 (+) True LOC103037625
XM_007231622.3 mRNA downstream 99592 30713604 ~ 30746863 (+) False LOC103037625
LOC107197844 other upstream 1533160 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 1568319 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 1570451 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 1586944 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 1611952 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 840972 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 1209574 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 1585171 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 1585171 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 1585879 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile