RNA id: TU114274


Basic Information

Item Value
RNA id TU114274
length 244
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G84858
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30704476 ~ 30707183 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aacagatttaaaggcttatttcacccaaatattaccaattcagctacctacttacagatttaaaggcttattcacccaaaaataccaattcagctaactacttacagaTTTTAAAGacttatttcacccaaatattaccaattcagctaactacttacagatttaaagacttatttcacccaaatattaccaattcagctaactactaacagatttaaaggcttatttcacccaaatattacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114245 lncRNA upstream 15315 30686920 ~ 30689161 (+) True G84831
TU114231 lncRNA upstream 89423 30612058 ~ 30615053 (+) False alg3
TU114230 lncRNA upstream 90464 30612058 ~ 30614012 (+) False alg3
TU114207 lncRNA upstream 110068 30593633 ~ 30594408 (+) True G84806
TU114204 lncRNA upstream 115453 30580056 ~ 30589023 (+) True G84804
TU114297 lncRNA downstream 63418 30770601 ~ 30771083 (+) True G84870
TU114307 lncRNA downstream 98018 30805201 ~ 30805742 (+) True G84877
TU114354 lncRNA downstream 190736 30897919 ~ 30899179 (+) True G84906
TU114313 lncRNA downstream 205700 30912883 ~ 30922290 (+) True G84881
TU114314 lncRNA downstream 205700 30912883 ~ 30915338 (+) False G84881
XM_022672497.1 mRNA upstream 72844 30627847 ~ 30631632 (+) True LOC111193145
XM_022672499.1 mRNA upstream 72844 30627847 ~ 30631632 (+) False LOC111193145
XM_022672498.1 mRNA upstream 72844 30627847 ~ 30631632 (+) False LOC111193145
XM_007231619.2 mRNA upstream 89414 30606757 ~ 30615062 (+) True alg3
XM_022673148.1 mRNA upstream 140682 30425710 ~ 30563794 (+) True LOC103031349
XM_007231620.3 mRNA downstream 6421 30713604 ~ 30746863 (+) True LOC103037625
XM_007231622.3 mRNA downstream 6421 30713604 ~ 30746863 (+) False LOC103037625
XM_007231621.3 mRNA downstream 6421 30713604 ~ 30746863 (+) False LOC103037625
XM_022673150.1 mRNA downstream 6422 30713605 ~ 30746863 (+) False LOC103037625
XM_007231626.3 mRNA downstream 6422 30713605 ~ 30746863 (+) False LOC103037625
LOC107197844 other upstream 1625578 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 1660737 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 1662869 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 1679362 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 1704370 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 747801 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 1116403 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 1492000 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 1492000 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 1492708 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile