RNA id: TU114314


Basic Information

Item Value
RNA id TU114314
length 1889
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G84881
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30912883 ~ 30922290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGAAAGGAAAAcaagcttttattttgtatccaggtataaaattaaaagtacatGATGTCACATGGCAACAGTAAAAGGTTTGGGTGTTCAGAACGTTACATTAGTTAGTGTAGCTCAGTTAGGCAGAGCAGCATTCAACCTTCTTCTACTACACTGTTTAATATCATGAAACCAAAGACGGGTGAAGGTGTTCTGAAACTTGACAACTTTAGTATCTTAAGAGTTTTGACGTCTTGTTGAGAAAGTCTGCTCTCTAGTGGCTAGTAGATGTTTTTGGGCTTTCAACAAACACCAGTTAAACAGAAAAAGCATTCCTAATGTCCTCCTTTTCTGATGTCCCTCTCCCAACACTGCTCCTAATAATTTACAGCATTAAAGTTGTTGTAAGGGATTTGAATTTTACAATctgatttataatgttttaaatatggaGCAGTCCAACTATGCTTCTACAGAACATCATGTGAGGAGCAAAACCCctccacaaaaacaaaaaaaaacacaatgtttatTTACTGGTTCAAGAAAGCAAATGTCCAAAAACCAGACGTGAATGAGTATCAGGCAGTCCCACATAAAACAGACTACGTTGGATTTTTATCCTGTAAAGCTTTAAGAATTGAGTAAAAAGGCATTTCCACTTCACGGTCAGGAGTTAGCACGTGCACACAATCAGGAGCAGAAGATCTCAGATGCAACGCTGTCCATAGGCTGCCAGGAACAACTCATAAGCGAATCATAGAGCTCCTCACTGCGCTCCATAAACTGCTTGTTCAATACTTCCACATCCACTTGTGGGTTTGGATCTGGAGGagaaaatataaagaaagaaaatcagcTCAATACTCAACTGACCAGGCTGTGATTTTGGATATGAGAATAAGCTTATGTGCAAAATTATACagtgacttgcaaaagtattcatacccctcaaattcttcacattttattaaggttttattaagattttaaatgatagaccaaaaCAAAGAGCTCATAACAGTAAAGTGgcatgaaaatgatacatgtttttcaaaattttaatgtATGATGTGCGAAAGTATTTAGCATTcctatatcaatatttagtagagccaccttttactgcaattacagctgcaggtCTTCTGGtctggggtttgtctctaccagctttgtgcatctagagaatgagatttttgccccattcttctttataaaacagatcAAGCTCAGCCAGCTTGTATTGAGggcatctgtgaacagcaatttttatTTCTTGCCACAAATGTTCATtcaaacacatgaatattcttttatCTAAATTGTTCCACTgtagctgtatgtttagggtcattgtcttgctggaaggaaAATCTCCTTCCTAATCTAAAGTCTTTTgaagcctccaacaggttttttgCAACAAATAACtcaaatttttatcccattttcgccccaatttacacggccaaatacccaacccactcactaggactctccccatcactagtgatgccccaacacaccagaagggtgaagactaacacatgcctcctctgatacatgtgaagtcagccaccacttcttttcgagctgctgctgatgcagcattgcagaggagcatcacagcgcactcggaagAAAGCTCAActactcggttccgatacatcagctcacagacgcttgtGCTgttcgacatcaccctttggagtgatgaggaaaGAGAGTGACATCTAAAACACCCAGAGAGTGCAAGGCCAATTAGCATTTAGCACTTAGCCCGAAGGAGCACTTGGAGTCCATAATCTGTAAACTTTCATTCATTAATCTGCGGTCACATCCCTAAAcatgaaaaacctgaaaatatgaaatctgaaaataaatCCATCTCTTTAACAACAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114354 lncRNA upstream 13704 30897919 ~ 30899179 (+) True G84906
TU114307 lncRNA upstream 107141 30805201 ~ 30805742 (+) True G84877
TU114297 lncRNA upstream 141800 30770601 ~ 30771083 (+) True G84870
TU114274 lncRNA upstream 205700 30704476 ~ 30707183 (+) False G84858
TU114481 lncRNA downstream 135072 31050410 ~ 31050652 (+) True G84997
TU114482 lncRNA downstream 135489 31050827 ~ 31051026 (+) True G84998
TU114510 lncRNA downstream 328141 31243479 ~ 31259853 (+) True G85020
TU114512 lncRNA downstream 332010 31247348 ~ 31253592 (+) True G85021
TU114517 lncRNA downstream 346211 31261549 ~ 31264054 (+) True G85026
XM_022673164.1 mRNA upstream 20199 30883308 ~ 30892684 (+) True rpp40
XM_022673165.1 mRNA upstream 20199 30883308 ~ 30892684 (+) False rpp40
XM_015600848.2 mRNA upstream 166020 30713610 ~ 30746863 (+) False LOC103037625
XM_007231650.3 mRNA downstream 7631 30922969 ~ 30938428 (+) True LOC103044961
XM_007231651.3 mRNA downstream 27338 30942676 ~ 30991541 (+) True znf407
XM_015600856.2 mRNA downstream 114673 31030011 ~ 31049206 (+) True tshz1
XM_022673168.1 mRNA downstream 238271 31153609 ~ 31238682 (+) True znf236
XM_022673169.1 mRNA downstream 238271 31153609 ~ 31238682 (+) False znf236
LOC107197844 other upstream 1833985 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 1869144 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 1871276 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 1887769 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 1912777 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 539646 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 908248 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 1283845 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 1283845 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 1284553 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile